Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000460-TA|BGIBMGA000460-PA|undefined
         (160 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34673| Best HMM Match : UK (HMM E-Value=0.6)                        32   0.19 
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.2  
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)                   28   4.2  
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13)                    27   5.5  
SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10)                   27   7.3  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)                   27   9.6  

>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
          Length = 641

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 60  ESAEAEPRDELTDW-ELPESSDESTDLPSLGLLSTASAE 97
           E+ EAE  DEL +  ELP  + ESTD P   L ST + E
Sbjct: 323 EAEEAEDSDELDEANELPNRTQESTDTPDKPLESTHAPE 361


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 67   RDELTDWELPESSD-ESTDLPSLGLLSTASAEPLSDSDLAFLRGRGVSGQSAGRGNI 122
            +DE  +W+LPE SD E+ D  +   +S   A   + S+ A+     +  QS G  +I
Sbjct: 1015 KDE-ENWDLPEESDEENCDGETRSAVSNRKARMQNISETAYQAKEDLQAQSKGYSDI 1070


>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
          Length = 1206

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 49  LGLGPVFVELLESAEAEPRDELTDWELPESSDEST-DLP--SLGLLSTASAEPLSDSDLA 105
           +G G   +EL   + ++ RDE  D  L  +SD S+ D+P    G +S ++ +P       
Sbjct: 619 IGSGEKELELFHKSGSKSRDETLDGVLWIASDSSSADVPIWKSGFVSVSTLKPFK----M 674

Query: 106 FLRGRGVSGQSA 117
            +RG  V GQ A
Sbjct: 675 VVRGTIVPGQGA 686


>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 63   EAEPRDELTDWELPESSDESTDLPSLGLLSTASAEPLSDSDLAFLRGRGVSGQSAGRGNI 122
            E +P+  L+  +L   + +  D   +  LS+  +   +      + G  +  QS   G  
Sbjct: 1009 EIKPKTSLSSQQLVRFAWQVAD--GMQYLSSQKSIQCATLPPQSIPGASIPPQSIP-GAF 1065

Query: 123  VCPGPTLGESWPPQGVPGLSIRP 145
            + P    G S PPQ +PG SI P
Sbjct: 1066 LPPQSIPGASLPPQSIPGASISP 1088


>SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13)
          Length = 1606

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 61   SAEAEPRDELTDWELPESSDESTDLPSLGLLSTASAEP--LSDSDLAFL 107
            S E+    EL+D+ +P  + ++ +L  +GL  +++  P  +  SDL FL
Sbjct: 1012 SLESVRAPELSDYYVPSKTQKNAELAYIGLHRSSAQIPNRIHQSDLLFL 1060


>SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10)
          Length = 289

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 52  GPVFVELLESAEAEPRD-ELTDWELPESSDESTDLPSLGLLSTASAEPLSDSDL 104
           G  F+E  E A+++PR    T+   P  S+++  LP       ASA+   D+ L
Sbjct: 90  GVTFIEPFEGAQSKPRTRSCTEALPPVDSEQAPALPIASSAVEASADHSIDNSL 143


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 52  GPVFVELLESAEAEPRDELTD-WELPESSDES-TDLPSLGLLSTASAEPLSDSDLAFLRG 109
           G VF +  + A+ +  DE  D +E  + +DE+ +   S     T + EP   +D +F R 
Sbjct: 837 GNVFKKKKKHAKRKRSDEEFDSYESGDYTDETGSSCDSEEYTDTDNDEPAHKNDGSFPRR 896

Query: 110 RGVSGQSAGRGNIVCPGPTLGESWPPQGVPG 140
                Q+ G        P  G   PP   PG
Sbjct: 897 NESPSQTPGGSESPSASPPGGSVPPPPPPPG 927


>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
          Length = 1485

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)

Query: 120 GNIVCPGPTLGES 132
           GNIVC GP LG+S
Sbjct: 214 GNIVCAGPDLGDS 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.139    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,507,093
Number of Sequences: 59808
Number of extensions: 165094
Number of successful extensions: 315
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 10
length of query: 160
length of database: 16,821,457
effective HSP length: 77
effective length of query: 83
effective length of database: 12,216,241
effective search space: 1013948003
effective search space used: 1013948003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)