Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000460-TA|BGIBMGA000460-PA|undefined
         (160 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /...    29   1.1  
At1g63210.1 68414.m07144 hypothetical protein contains Pfam prof...    29   1.5  
At3g51790.1 68416.m05679 cytochrome c biogenesis protein CcmE fa...    27   6.0  
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ...    27   6.0  
At3g03950.2 68416.m00414 expressed protein contains Pfam profile...    27   6.0  
At3g03950.1 68416.m00413 expressed protein contains Pfam profile...    27   6.0  
At2g40120.1 68415.m04934 protein kinase family protein contains ...    27   6.0  
At1g74040.1 68414.m08574 2-isopropylmalate synthase 1 (IMS1) ide...    27   6.0  
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain...    27   6.0  
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    27   7.9  

>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           SEC14-like protein 2 (Alpha-tocopherol associated
           protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
           taurus}; similar to GI:807956 from [Saccharomyces
           cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
           contains Pfam PF03765 : CRAL/TRIO, N-terminus
          Length = 573

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 51  LGPVFVELLESAEAEP--RDELTDWELPESSDESTDL 85
           + PV VE +  AEAEP   +E++ W +P   DE +D+
Sbjct: 221 VAPVVVETVAVAEAEPVEPEEVSIWGVPLLQDERSDV 257


>At1g63210.1 68414.m07144 hypothetical protein contains Pfam
           profile: PF04283 protein of unknown function (DUF439)
          Length = 1197

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 38  FGASCNGFGCGLGLGPVFVELLESAEAEPRDELTDWELPESSDESTDLPSLGLLSTA--S 95
           FG S    G  L L  VFV+ LE A+  P +   ++E     D    L     ++    S
Sbjct: 279 FGYSAEQLGLALSLEKVFVDELEDAKKTPEEMALNYECAMFGDSQAVLKGARHMAAVEIS 338

Query: 96  AEPLSDSDL--AFLRGRGVSGQSAGRGNIV 123
            EP     +   F+    VS      GN+V
Sbjct: 339 CEPSIRKYVRGIFMENAVVSTSPTPDGNVV 368


>At3g51790.1 68416.m05679 cytochrome c biogenesis protein CcmE
           family contains Pfam profile: PF03100 cytochrome c-type
           biogenesis protein CcmE
          Length = 256

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 78  SSDESTDLPSLGLLSTASAEPLSDSDLAFLRGRGVSGQSAGR 119
           SS ES   P    L+TAS +P   S L FLR   ++ +   R
Sbjct: 25  SSFESPPCPIFHSLTTASPDPSRLSSLTFLRSLSIARRGPTR 66


>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
           domain protein TSO1 [Arabidopsis thaliana] GI:7767425
          Length = 695

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 65  EPRDELTDWELPESSDESTDLPSLGLLSTASAEPLSDSDLAFLRGRGVSGQ 115
           + +  + D  +   S  S  +P +GL   A A    DS+++ + G  +SG+
Sbjct: 287 DDQQSVCDNNVAGESSSSCVVPGIGLHLNAVAMSAKDSNISVIHGYSISGE 337


>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 424

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 105 AFLRGRGVSGQSAGRGNIVCPGPTLGESWPPQ 136
           +F  GRG S + A R N +C GP   +   PQ
Sbjct: 176 SFNHGRGYSDEKADRLNELCRGPRSSDFKNPQ 207


>At3g03950.1 68416.m00413 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 425

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 105 AFLRGRGVSGQSAGRGNIVCPGPTLGESWPPQ 136
           +F  GRG S + A R N +C GP   +   PQ
Sbjct: 177 SFNHGRGYSDEKADRLNELCRGPRSSDFKNPQ 208


>At2g40120.1 68415.m04934 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 570

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 51  LGPVFVELLESAEAEPRDELTDWELPESSDESTDLPSLGLLSTASAEPLSDSDLAFL 107
           LGP+  E+LE  +   +    +++L   ++ES ++  +    ++  E L  SD  FL
Sbjct: 481 LGPIETEMLEKGQETHKYFTKEYDLYHLNEESNEIEYIITEESSLEEQLQVSDELFL 537


>At1g74040.1 68414.m08574 2-isopropylmalate synthase 1 (IMS1)
           identical to 2-isopropylmalate synthase (IMS1)
           [Arabidopsis thaliana] GI:12330687;  identical to cDNA
           2-isopropylmalate synthase (IMS1) GI:12330686
          Length = 631

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 76  PESSDESTDLPSLGLLSTASAEPLSDSDLAFLRGRGVSGQSAGR 119
           P  S  S  +PS+  LS++S  P S   L     R +S  +AG+
Sbjct: 9   PNLSSPSFGVPSIPALSSSSTSPFSSLHLRSQNHRTISLTTAGK 52


>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471;contains Pfam PF00917: Meprin And
           TRAF-Homology (MATH) domain
          Length = 1052

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 62  AEAEPRDELTDW-ELPESSDESTDLPSLGLLSTASAEPLSDSDLAFLRGRGVSGQSAGRG 120
           + AE  D L D  ++ +S D S D+    L    S+  L D+D   +      G S GRG
Sbjct: 480 SSAEKPDTLGDVSDISDSVDGSADILQPDLEDRDSSSVLWDTDALEIHPPSSEGSSRGRG 539

Query: 121 -NIVCP-GPTLGES 132
            +I  P G T G+S
Sbjct: 540 ISISTPNGITEGKS 553


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 47  CGLGLGPVFVELLESAEAEPRDELTDWELP 76
           C    GP F E+L+S E  PRD    + +P
Sbjct: 305 CPWWSGPSFFEVLDSIEIPPRDPNGPFRMP 334


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.139    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,428
Number of Sequences: 28952
Number of extensions: 129263
Number of successful extensions: 302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 10
length of query: 160
length of database: 12,070,560
effective HSP length: 76
effective length of query: 84
effective length of database: 9,870,208
effective search space: 829097472
effective search space used: 829097472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)