GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000460-TA|BGIBMGA000460-PA|undefined
         (160 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   3.1  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   4.1  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   5.4  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    25   7.1  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    24   9.4  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    24   9.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 18/61 (29%), Positives = 25/61 (40%)

Query: 85   LPSLGLLSTASAEPLSDSDLAFLRGRGVSGQSAGRGNIVCPGPTLGESWPPQGVPGLSIR 144
            LP   +LS+ ++EP  D   +    + VS   A     V P P L    PP  +P     
Sbjct: 973  LPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAP 1032

Query: 145  P 145
            P
Sbjct: 1033 P 1033


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 53  PVFVELLESAEAEPRDELTDWELPESSDESTDL 85
           P+   LLES+E + ++E+      E +DES  L
Sbjct: 245 PLSASLLESSEPKEKEEIVGSLEEEGTDESASL 277


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 57  ELLESAEAEPRDELTDWELPESSDESTDLPS--LGLLSTASAEPLSDS 102
           ELL  A    R  L+  EL  + D  T +PS  L  LS++  EP +DS
Sbjct: 580 ELLRFANLVYRFFLSIGELNSAYDLYTHIPSDALNTLSSSDGEPENDS 627


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 87  SLGLLSTASAEPLSDSDLAFLRGRGVSGQS 116
           +L  L TASAEPL   ++A      +S  S
Sbjct: 225 ALNFLGTASAEPLPSEEVALAALEAISDPS 254


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 49  LGLGPVFVELLESAEAEPRDELTDWELPESSDESTDLPSLGLLSTASAEPLSDSDL 104
           LG  PV  +L+ S E+    + +    PE+ D   DLP   + S  SA P+ + ++
Sbjct: 483 LGDRPVVGDLVYSTESNGLSQKSPIVDPEAPDLLEDLP---VSSKLSARPIEEDEV 535


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 105 AFLRGRGVSGQSAGRGNIVCPGPTLGESWPPQGVPGLS 142
           A+ R    S   AG GN++ PG T   +  P G   LS
Sbjct: 180 AWKRMMKASSGEAGAGNVITPGVT-STTGAPSGKASLS 216


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.139    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,752
Number of Sequences: 5004
Number of extensions: 20813
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 6
length of query: 160
length of database: 2,362,478
effective HSP length: 68
effective length of query: 92
effective length of database: 2,022,206
effective search space: 186042952
effective search space used: 186042952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)