Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000460-TA|BGIBMGA000460-PA|undefined
(160 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197 30 1.0
04_04_0009 + 22134160-22134696 29 2.3
01_06_0990 - 33623085-33623615,33624138-33624278 28 3.1
11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328... 28 4.1
08_02_1413 + 26897815-26899299 27 5.4
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886... 27 7.1
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078... 27 7.1
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581... 27 7.1
10_08_0203 + 15776521-15776656,15776662-15776819 27 9.4
02_05_0978 - 33242938-33242988,33243729-33243911,33244458-332445... 27 9.4
>10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197
Length = 490
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 69 ELTDWELPESSDESTDLP-SLGLLSTASAEPLSDSDLAFLRGRGVSGQSAGR 119
E D E + + ST L +L +L S PL D A LR V+G +AGR
Sbjct: 58 EFGDTERLFAGERSTSLVRTLAVLQALSVGPLVDVATAALRSPAVAGSAAGR 109
>04_04_0009 + 22134160-22134696
Length = 178
Score = 28.7 bits (61), Expect = 2.3
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 58 LLESAEAEPRDELTDWELPESSDESTDLPSLGLLSTASAEPLSDSDLAFLRGRGVSGQSA 117
LL + DE + + S DE +L + AS+ S SD+ +GR G++
Sbjct: 3 LLSPRNGDEEDEQEEIQELISDDEPPNLKLASCATAASSSSSSGSDME--KGR---GKAC 57
Query: 118 GRGNIVCPGPTLGESWPPQGVPGLSIR 144
G G+ P P S G G +IR
Sbjct: 58 GGGSTAPPPPPPSSSGKSGGGGGSNIR 84
>01_06_0990 - 33623085-33623615,33624138-33624278
Length = 223
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 72 DWELPESSDESTDLPSLGLLSTASAEPLSDSDLAFLRGRGVSGQSAGRG 120
+WELPES +E T P G T ++ L L + + G G
Sbjct: 127 EWELPESGEEGTAPPRSGAHMTEVTIRITKRQLQELVDKRAAAAGGGHG 175
>11_01_0428 +
3279662-3279784,3281676-3281756,3281845-3281933,
3282011-3282085,3282211-3282269,3282316-3282414,
3282762-3283013,3283050-3283180
Length = 302
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 108 RGRGVSGQSAGRGNIVCPGP---TLGESWPPQG 137
RGRG G GRG + GP GE W +G
Sbjct: 162 RGRGRGGGRRGRGRAMSNGPPAYDYGEEWEEEG 194
>08_02_1413 + 26897815-26899299
Length = 494
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 64 AEPRDELTDWELPESSDESTDLPSLGLLSTASAEPLSDSDLAFLRGRGV 112
A+P E W++P + T+L G+ A A P S D+ F R GV
Sbjct: 304 AKPIHERVPWQMPPA----TELQDAGVTFRAKASPRSLVDVTFDRRGGV 348
>04_03_0283 +
13887388-13887573,13887711-13887806,13888517-13888637,
13888734-13888840,13888949-13889166,13890219-13890396,
13890492-13890611,13891601-13891687,13892401-13892511,
13892618-13893439
Length = 681
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 52 GPVFVELLESAEAEPRDELTDWELPESSDESTD-LPSLGLLSTASAEPLSDSDL 104
GPV + +E E E +E D+E S DE + G ++ A ++SD+
Sbjct: 622 GPVAEDGIEEEEEEEEEEYDDYESEYSDDEEDEKSKGKGKVANGVAHQKANSDI 675
>01_06_1258 +
35806557-35806932,35807517-35807679,35807789-35807837,
35807943-35808866,35808954-35809049,35809142-35809257,
35809345-35809447,35809570-35809658,35809750-35809900,
35809995-35810141,35810238-35810366,35810451-35810529,
35810616-35810725
Length = 843
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 38 FGASCNGFGCGLGL-GPVFVELLESAEAEPRDELTDWELPESSDESTD 84
FG C G G G +FV L EP D +T +L E +E TD
Sbjct: 121 FG-KCIGMGDSKEFAGELFVALARRRNLEPEDGITKEQLKEFWEEMTD 167
>01_01_0753 -
5814087-5814344,5814461-5814646,5814847-5815004,
5815082-5815214,5815299-5815489,5815826-5816281,
5816543-5816661,5816729-5816872,5816994-5817065,
5817368-5817500,5817598-5817733
Length = 661
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 50 GLGPVFVELLESAEAEPRDELTDWE 74
G G +EL E EA+P L DW+
Sbjct: 44 GEGMALLELRERVEADPHGALRDWD 68
>10_08_0203 + 15776521-15776656,15776662-15776819
Length = 97
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 107 LRGRGVSGQSAGRGNIVCPGP 127
L G G SG + GRG PGP
Sbjct: 51 LEGSGSSGTTIGRGGSATPGP 71
>02_05_0978 -
33242938-33242988,33243729-33243911,33244458-33244520,
33244656-33246083
Length = 574
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 106 FLRGRGVSGQSAGRGNIVCP 125
FLRGRG+S + R + CP
Sbjct: 344 FLRGRGISNEDVARMVVRCP 363
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.139 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,400,067
Number of Sequences: 37544
Number of extensions: 183390
Number of successful extensions: 423
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 11
length of query: 160
length of database: 14,793,348
effective HSP length: 77
effective length of query: 83
effective length of database: 11,902,460
effective search space: 987904180
effective search space used: 987904180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)
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