GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000460-TA|BGIBMGA000460-PA|undefined
         (160 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical...    33   0.13 
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    30   0.90 
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    30   0.90 
Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL034543-4|CAA22518.1|  323|Caenorhabditis elegans Hypothetical ...    29   2.1  
AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical ...    28   3.6  
AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical ...    27   6.3  

>AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.18 protein.
          Length = 921

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 53  PVFVELLESAEAEPRDELTDW-ELPESSDESTDLPSLGLLSTASAEPLSDSDLAF 106
           PV +E  +    E R+   +  E PE  D+  +L  L +L+T +A+PL +  L F
Sbjct: 790 PVKIEEFKPKIQEKRENPDEEAEEPEEDDKEANLEELSILTTLTAQPLDEDTLLF 844


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 53   PVFVELLESAEAEPRDELTDW-ELPE------SSDESTDLPSLGLLSTASAEPLSDSDLA 105
            PV  E  E  + EP DE  D  E P       +SD+S D+PS    +  S+E  +D++ A
Sbjct: 1754 PVEAEEEEGVKQEPDDETQDSAEAPPVLSAEVNSDDSNDVPSTSAAAAVSSETAADAEPA 1813


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 29.9 bits (64), Expect = 0.90
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 53   PVFVELLESAEAEPRDELTDW-ELPE------SSDESTDLPSLGLLSTASAEPLSDSDLA 105
            PV  E  E  + EP DE  D  E P       +SD+S D+PS    +  S+E  +D++ A
Sbjct: 1754 PVEAEEEEGVKQEPDDETQDSAEAPPVLSAEVNSDDSNDVPSTSAAAAVSSETAADAEPA 1813


>Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical
           protein F20D1.7 protein.
          Length = 695

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 39  GASCN--GFGCGLGLGPVFVELLESAEAEPRDELTDWELPESSD----ESTDLPSLGLLS 92
           G SCN     C     P     LE  +  P +E TD  L    +       D+P L +L 
Sbjct: 25  GCSCNESSISCTFLTKPELYVFLEVLKDSPFNETTDLSLASIDNFWLRMLPDMPKLRVLK 84

Query: 93  TASAEPLSDSDLAFLR 108
             S+  L DSD  FLR
Sbjct: 85  VQSSPSLDDSDW-FLR 99


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
          protein C52E4.3 protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 61 SAEAEPRDELTDWELPESSDESTDLPSLGLLSTA 94
          SA+A+PR E+T  EL    DE  ++  L +L+ +
Sbjct: 2  SAQAKPRSEMTAEELAAKEDEEFNVGPLSILTNS 35


>AL034543-4|CAA22518.1|  323|Caenorhabditis elegans Hypothetical
           protein Y81G3A.5 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 111 GVSGQSAGRGNIVCPGPTLGESWP--PQGVPGLSIRP 145
           G+S   +  G I CP   +G   P  P GVPG +  P
Sbjct: 128 GISESHSSSGCITCPAGPMGSPGPDGPPGVPGATGNP 164


>AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical
           protein T10D4.6 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 70  LTDWELPESSDESTDLPSLGL--LSTASAEPLSDS 102
           L DW   E S+ S +LPS     + TA A P S+S
Sbjct: 468 LEDWGCREGSERSENLPSTSAIPMDTAPAPPASES 502


>AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical
           protein C24F3.6 protein.
          Length = 291

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 113 SGQSAGRGNIVCPGPTLGESWPPQGVPGLSIRP 145
           + + AG GN  C G  L  +  P G PG + RP
Sbjct: 77  TARQAGEGNGQCEGCCLPGAQGPPGTPGSAGRP 109


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.139    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,645
Number of Sequences: 27539
Number of extensions: 124063
Number of successful extensions: 286
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 9
length of query: 160
length of database: 12,573,161
effective HSP length: 76
effective length of query: 84
effective length of database: 10,480,197
effective search space: 880336548
effective search space used: 880336548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 56 (26.6 bits)