Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000459-TA|BGIBMGA000459-PA|IPR013129|Transcription
factor jumonji, IPR003347|Transcription factor jumonji/aspartyl
beta-hydroxylase
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    31   0.29 
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    31   0.38 
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    29   1.5  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    28   2.7  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   3.6  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   4.7  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    27   4.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   6.2  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   6.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.2  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    26   8.2  

>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 31.1 bits (67), Expect = 0.29
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 374 PGQMLFIPPKWWHFVESLSISFSVSFWW 401
           PGQ +F+P  W+H V ++  + S++  W
Sbjct: 305 PGQTVFVPSGWYHQVLNIGTTLSINHNW 332


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 30.7 bits (66), Expect = 0.38
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 372 LNPGQMLFIPPKWWHFVESLSIS 394
           L PG ML++P  W+H V S S S
Sbjct: 380 LEPGDMLYLPASWFHEVTSSSAS 402



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 296 WYGPK--GTVSPLHHDPKKNLLSQVVGEKQIYLFPPSDSKYL 335
           W G    GT S LHHD   N+ + + G K+  +  P  +  L
Sbjct: 166 WIGKSENGTSSGLHHDFHDNIYAVISGYKRFVIISPDHANQL 207


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/50 (36%), Positives = 24/50 (48%)

Query: 121 IENELQLLQKCAGLLNPYSSDYVSEISTNTIKLKHNEVNVEPNKCNTVPV 170
           + N L   +  A LL  Y    V++I   T K KH+E  VE  K   VP+
Sbjct: 20  VTNYLVANKDAADLLRRYHRQEVADILNATSKSKHSEAVVEILKSAKVPL 69


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 27/135 (20%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 175 CPSM--ESFYTNRILKEKPVVLINCMNNWPALTKWNDQNYFLKMAGLRTVAVELGSKYTD 232
           CP M   +     +LK+  ++L    ++  A     + ++  K+ G   +A +L + +  
Sbjct: 257 CPVMPANAMIPQDVLKQIRLILTKKEDDADAENHRRNVHWITKLLGEAALANDLSTSFVI 316

Query: 233 SDWTQKLMTVEEFIKDHIYQSNGPKGYLAQYQLFDQIPELKADIIEPEYC-CFAETENPI 291
           S+ + +L    +++   + + +      +    F   P +  D +  +YC  ++   NPI
Sbjct: 317 SEGSSELFDSSDYVS--VRRPDDFSFIPSMQGPFLLQPAVADDELIEDYCDIYSFGMNPI 374

Query: 292 DVMAWYGPKGTVSPL 306
           DV+A  G +G +  L
Sbjct: 375 DVLAIGGSEGRLDLL 389


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 149 NTIKLKHNEVNVEPNKCNTVPVD-VMDCPSMESFYTNRILKEKPV 192
           +T+KL+ N VN+      TV VD V+ C  M+   T+ I  E P+
Sbjct: 542 HTVKLEDNTVNLSFVNETTVSVDKVVICIPMDKLNTHLITFEPPL 586


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 211 NYFLKMAGLRTVAVELGSKYTDSDWTQKLMTVEEFIKDHIYQSNGPKGYLAQYQLF 266
           N+  +   L   AVE G    + D    LM  +E ++D   +SNGP+     Y+ F
Sbjct: 169 NFNKQTLALEEEAVEEGVLGDEDDGIDLLMDPDENMEDSEDESNGPQADSIMYEDF 224


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 146 ISTNTIKLKHNEVNVEPNKCNTVPVDVMDCPSMESFYTN 184
           +S  T  +   E N  P +  +VP DV + P +ES Y N
Sbjct: 27  LSDPTYPMNLEEKNQIPYRFQSVPDDVPEVPHIESRYKN 65


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 18/83 (21%), Positives = 39/83 (46%)

Query: 7    LCRKFELFLPNVELSLSEVIELDGCTKSLLNHFIKNPNTLNQRTLIKIQAIIDYMHEKIN 66
            LC K  L       SL     +D    ++ ++F +  + +++    + Q++ + + E+I 
Sbjct: 3294 LCLKCLLSFSQHAASLRICHGIDAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERIL 3353

Query: 67   IGNWKDVKLYLRKTITISSYLKL 89
            + +WKD  +Y  K     S+ +L
Sbjct: 3354 LMSWKDTNVYALKESAKKSHAEL 3376


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 2   SDVLDLCRKFELFLPNV--ELSLSEVIELDGCTKSLLNHFI-KNP 43
           S+V D   ++++ + N   E +L E++E+ GC   ++ +FI K P
Sbjct: 263 SEVEDEMSEYDVRVLNFLNESTLQEIVEVSGCESKVVEYFISKRP 307


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 158 VNVEPNKCNTVPVDVMD-CPSMESFYTNRILKEKPVVLINCMNNWPALTKWNDQNYFLKM 216
           +++EP +   + +D  D  P M+ FY N+ L++ P V      N P   +W  +    +M
Sbjct: 203 LDLEPLEAIRMDLDEEDDAPVMDWFYENKALEDTPHV------NGPTYRRW--KLNLPQM 254

Query: 217 AGLRTVAVELGSKYTDSDW 235
           A L  +  +L S   D ++
Sbjct: 255 ANLHRLGYQLLSDLRDDNY 273


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 10  KFELFLPNVELSLSEVIE---LDGCTKSLLNHFIKNPNTLNQRTLIKIQAIIDYMHEKIN 66
           +F++ +P V+  L   ++   +DG + S+  HF     +L    LI+   + DY  + + 
Sbjct: 139 EFKVDMPLVQKRLGAFLKKNRVDGLSLSM--HFSTGNYSLP--VLIRHVLLYDYYTDDMK 194

Query: 67  IGNWKDVKLYLRKTITISSYLKLLIY 92
              W+ + +Y+ + +T + Y K  ++
Sbjct: 195 DSLWRAMIIYVSRQVTSNKYTKFHLW 220


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,667
Number of Sequences: 5004
Number of extensions: 96244
Number of successful extensions: 242
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 14
length of query: 402
length of database: 2,362,478
effective HSP length: 74
effective length of query: 328
effective length of database: 1,992,182
effective search space: 653435696
effective search space used: 653435696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)