GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000459-TA|BGIBMGA000459-PA|IPR013129|Transcription
factor jumonji, IPR003347|Transcription factor jumonji/aspartyl
beta-hydroxylase
         (402 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.96 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   2.2  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   2.9  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   2.9  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.9  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   6.8  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   6.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 233 SDWTQKLMTVEEFIKDHIYQSNGPKGYLAQYQLFDQIPELKADIIE 278
           +DW  +   V +F  + I   NG K +   ++   +IP    D +E
Sbjct: 182 ADWLNEQRAVIDFDNNEILLRNGEKHHSFPFRKTTEIPPEPEDYVE 227


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 329 PSDSKYLYPHDHELLSNTAKVDPREPNYEIYPEYRHAKAYYCKLNP 374
           PS S   Y H++   + TA       +   Y    +A  YY ++ P
Sbjct: 270 PSASPLAYQHEYNSFNWTANGHGHNTSSHNYYAQNYAPTYYGQMQP 315


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 64  KINIGNWKDVKLYLRKTITISSYLKLLIYWKDPNNPMDDLLKESYKIIDFGLVFGCPIEN 123
           + ++  W DV    RK+  IS   K ++   DP   +D +     K+ D   +       
Sbjct: 225 RTSVEGWTDVSNVKRKSKEISKLPKSMLAISDPVFIVDQVAALHIKLTDTAHMINYAFCV 284

Query: 124 ELQLLQKCAGLLNPYSSDYVSEISTNTIKLKHNE 157
           + QLL+     ++  ++ ++  I+ N    + NE
Sbjct: 285 Q-QLLRITVAFISIVTALFLVAINFNKSSSEENE 317


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 64  KINIGNWKDVKLYLRKTITISSYLKLLIYWKDPNNPMDDLLKESYKIIDFGLVFGCPIEN 123
           + ++  W DV    RK+  IS   K ++   DP   +D +     K+ D   +       
Sbjct: 225 RTSVEGWTDVSNVKRKSKEISKLPKSMLAISDPVFIVDQVAALHIKLTDTAHMINYAFCV 284

Query: 124 ELQLLQKCAGLLNPYSSDYVSEISTNTIKLKHNE 157
           + QLL+     ++  ++ ++  I+ N    + NE
Sbjct: 285 Q-QLLRITVAFISIVTALFLVAINFNKSSSEENE 317


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 25  VIELDGCTKSLLNHFIKNPNTLNQR 49
           V+ L   T S++ H + NP +LN +
Sbjct: 247 VVGLPAPTSSIMMHHLVNPQSLNHQ 271


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 329 PSDSKYLYPHDHELLSNTAKVDPRE 353
           P D K+++PH   L  N + +   E
Sbjct: 94  PIDEKFVHPHRFRLKFNISSIPRHE 118


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 192 VVLINCMNNWPALTKWN 208
           ++ I C+  W    KWN
Sbjct: 49  IITIGCLCIWSIFNKWN 65


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,212
Number of Sequences: 317
Number of extensions: 4896
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 402
length of database: 114,650
effective HSP length: 58
effective length of query: 344
effective length of database: 96,264
effective search space: 33114816
effective search space used: 33114816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)