Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000459-TA|BGIBMGA000459-PA|IPR013129|Transcription
factor jumonji, IPR003347|Transcription factor jumonji/aspartyl
beta-hydroxylase
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0582 - 18694158-18694256,18694522-18694560,18695564-186957... 142 6e-34
01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704... 88 1e-17
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 62 8e-10
11_06_0149 - 20636801-20637044,20637859-20639180 60 2e-09
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 54 2e-07
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 41 0.002
09_04_0558 - 18504639-18505718 41 0.002
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922... 33 0.54
03_05_1090 + 30313176-30313292,30314162-30314236,30314938-303151... 30 3.8
06_03_1061 + 27282979-27286854 29 5.0
01_05_0074 + 17901185-17901258,17901758-17901845,17902195-179023... 29 5.0
01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097 29 5.0
05_04_0036 + 17386160-17386318,17386588-17386651,17387089-173871... 29 6.6
04_01_0330 - 4369326-4370852 29 6.6
01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858 29 6.6
11_01_0026 + 193383-194566,195726-195972,196099-198063 29 8.7
05_04_0310 + 20114415-20117819 29 8.7
>09_04_0582 -
18694158-18694256,18694522-18694560,18695564-18695707,
18695783-18695914,18696882-18697103,18697496-18697963
Length = 367
Score = 142 bits (343), Expect = 6e-34
Identities = 70/164 (42%), Positives = 103/164 (62%), Gaps = 5/164 (3%)
Query: 158 VNVEPNKC-NTVPVDVMDCPSMESFYTNRILKEKPVVLINCMNNWPALTKWNDQNYFLKM 216
+N+ P K + V+ C S+E F + L+E PV++ +++WPA TKW D Y K+
Sbjct: 162 LNILPAKSLSCKKVERRSCISLEEFICDYFLRESPVIISGSIDHWPARTKWKDIQYLKKI 221
Query: 217 AGLRTVAVELGSKYTDSDWTQKLMTVEEFIKDHIYQSNGPKG--YLAQYQLFDQIPELKA 274
AG RTV VE+G Y S+W Q+L+T +F+ + ++ + P YLAQ+ LF+QI EL
Sbjct: 222 AGDRTVPVEVGKNYVCSEWKQELITFSQFL-ERMWSAGCPSNLTYLAQHPLFEQIKELHE 280
Query: 275 DIIEPEYCCFAETENPIDVMAWYGPKGTVSPLHHDPKKNLLSQV 318
DI+ P+Y C+A + AW+GP GTV+PLHHDP N+L+QV
Sbjct: 281 DIMVPDY-CYAGGGELQSLNAWFGPHGTVTPLHHDPHHNILAQV 323
>01_06_0878 -
32669790-32669846,32670206-32670299,32670384-32670499,
32670786-32671096,32672243-32672364,32672754-32672870,
32672982-32673054,32673416-32673542,32673659-32673727,
32673811-32674170,32674493-32674633
Length = 528
Score = 88.2 bits (209), Expect = 1e-17
Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 6/133 (4%)
Query: 272 LKADIIEPEYCCFAETENPIDVMAWYGPKGTVSPLHHDPKKNLLSQVVGEKQIYLFPPSD 331
LK DI EP F + + W S H+DP NLL V G K++ L+PPS
Sbjct: 184 LKEDIQEPT---FLRGKPFSSINIWMNRAHLRSSTHYDPHHNLLCVVAGCKKVTLWPPSS 240
Query: 332 SKYLYPHD-HELLSNTAKVDPREPNYEIYPEYRHAKAYYCK--LNPGQMLFIPPKWWHFV 388
S YLYP + SN + V EP+Y Y R+ K Y + LN G LFIP W+H V
Sbjct: 241 SPYLYPMPVYGEASNHSSVSIEEPDYSRYTRARYMKEYSERVILNCGDALFIPEGWYHQV 300
Query: 389 ESLSISFSVSFWW 401
+S ++ +++FWW
Sbjct: 301 DSDDLTIAINFWW 313
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 62.1 bits (144), Expect = 8e-10
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 8/195 (4%)
Query: 170 VDVMDCPSMESFYTNRILKEKPVVLINCMNNWPALTKWNDQNYFLKMAGLRTVAVELGSK 229
++ C S+E+F + L E PV+L +++WPA TKW D Y ++AG RTV VE+ +
Sbjct: 179 IERRSCISLEAFIRDYFLCESPVILSGYIDHWPARTKWKDIRYLERIAGDRTVPVEI-KE 237
Query: 230 YTDSDWTQKLMTVEEFIKDHIYQSNGPKGYLAQYQLFDQIPELKADIIEPEYCCFAE-TE 288
+ + + GP+G + D L A P+ F + +
Sbjct: 238 LREDIMVPEYCNAGGGELQKLNAWFGPEGTVTPLH-HDLYHNLFAQ-GNPQILVFIQRVD 295
Query: 289 NPI--DVMAWYG-PKGTVSPLHHDPKKNLLSQVVGEKQIYLFPPSDSKYLYPHDHELLSN 345
+P+ ++ + + + S P L V+G K L+ S S LYPH +LSN
Sbjct: 296 HPLCFEITGMFALHQSSYSDKRLWPYPKWL-HVLGRKYFRLYSASISNDLYPHRETMLSN 354
Query: 346 TAKVDPREPNYEIYP 360
++VD N +P
Sbjct: 355 ISQVDLDNINVNEFP 369
>11_06_0149 - 20636801-20637044,20637859-20639180
Length = 521
Score = 60.5 bits (140), Expect = 2e-09
Identities = 61/235 (25%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 177 SMESFYTNRILKEKPVVLINCMNNWPALTKWNDQNYFLKMAGLRTVAVELGSKYTDSDWT 236
S+E F + +PV+L C+ +WPAL KW + + LK++ + AV S
Sbjct: 217 SVEQFVSEFEEPNRPVLLEGCLESWPALQKWT-REHLLKVSAGKEFAVGPVS-------- 267
Query: 237 QKLMTVEEFIK--DHIYQSNGPKGYLAQYQLFDQIPELKADIIEPEYCCFAE-------T 287
MT++ +++ D++ Q P YL + +++PE+ D P Y F E
Sbjct: 268 ---MTLDRYLQYADNV-QEERPL-YLFDAKFTEKVPEMGRDYEVPAY--FREDLFGVLGE 320
Query: 288 ENPIDVMAWYGPKGTVSPLHHDPKKNLLSQVV--GEKQIYLFPPSDSKYLYPHDHELLSN 345
E P GP G+ S H DP V G K+ +FPP +
Sbjct: 321 ERPDHRWVIIGPAGSGSSFHVDPNSTSAWNAVIKGAKKWVMFPPEVVPPGVHPSADGAEV 380
Query: 346 TAKVDPREPNYEIYPEYR--HAKAYYCKLNPGQMLFIPPKWWHFVESLSISFSVS 398
T+ V E Y + + C G+++F+P WWH V +L S +++
Sbjct: 381 TSPVSIMEWFMNFYGACKTWEKRPVECICRAGEVVFVPNGWWHLVINLEESIAIT 435
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 54.4 bits (125), Expect = 2e-07
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 296 WYGPKGTVSPLHHDPKKNLL--SQVVGEKQIYLFPPSDSKYLYPHDHELLSNTAKVDPRE 353
+ GPKGT +PLH D ++ + V G K PPS S +++ D L S+ ++ +
Sbjct: 182 YMGPKGTWTPLHADVFRSYSWSANVCGRKLWLFLPPSQSHFVF--DRNLRSSVYNIND-D 238
Query: 354 PNYEIYPEYRHAKAYYCKLNPGQMLFIPPKWWHFVESL 391
+ + +PE+ + K C +++F+P W+H V +L
Sbjct: 239 VSEKQFPEFNNTKWLECTQEQNEIIFVPSGWYHQVHNL 276
>03_03_0206 +
15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 41.1 bits (92), Expect = 0.002
Identities = 50/219 (22%), Positives = 82/219 (37%), Gaps = 17/219 (7%)
Query: 191 PVVLINCMNNWPALTKWNDQNYFLKMAGLRTVAVELGSKYTDSDWTQKLMTVE-EFIKDH 249
PV+L WPA TKW Q + + + + +E + +D
Sbjct: 109 PVLLTKLAETWPARTKWTAQQLTHDYGEVPFRISQRSPQKIKMKLKDYVFYMELQHDEDP 168
Query: 250 IYQSNGPKGYLAQYQLFD-QIPEL-KADIIEPEYCCFAETENPIDVMAWYGPKGTVSPLH 307
+Y + G A L D +P L + D E + P GP+ + + H
Sbjct: 169 LYIFDDKFGESAPTLLEDYSVPHLFQEDFFE----IMDYDQRPAFRWLIIGPERSGASWH 224
Query: 308 HDPKKNLL--SQVVGEKQIYLFPPSDSKYLYPHDHELLSNTAKVDPREPN-----YEIYP 360
DP + + G K+ ++PP + + VD P +IYP
Sbjct: 225 VDPGLTSAWNTLLCGRKRWAMYPPG--RVPGGVTVHVSDEDGDVDIETPTSLQWWLDIYP 282
Query: 361 EY-RHAKAYYCKLNPGQMLFIPPKWWHFVESLSISFSVS 398
H K C PG+ +F+P WWH V +L ++ +V+
Sbjct: 283 NLAEHEKPLECTQLPGETIFVPSGWWHCVLNLDMTIAVT 321
>09_04_0558 - 18504639-18505718
Length = 359
Score = 40.7 bits (91), Expect = 0.002
Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 34/147 (23%)
Query: 290 PIDVMAWYGPKGTVSPLHHDPKKNLLSQVVGEKQIYLFPPSDSKYLYPHDHELLSNTA-- 347
P V W G + + H D N+ V GEK L PP++ LY D+ A
Sbjct: 175 PEAVNLWIGSACSQTSFHKDHYDNIYVVVSGEKHFLLLPPTEHHRLYVRDYPAAHYAAED 234
Query: 348 ------KVDPREPN----------YEIYPEYRHAKA-----YY-------CKLNPGQMLF 379
K++ EP Y PE A+A Y+ C + G+ML+
Sbjct: 235 EAELRLKLELEEPERIVPWSSVDPYPPSPEEAAAQASSFPLYFEGPRPIRCTVRAGEMLY 294
Query: 380 IPPKWWHFVESL----SISFSVSFWWD 402
+P W+H V ++ +V++W+D
Sbjct: 295 LPSMWFHHVSQSPGPNGLTIAVNYWYD 321
>04_04_0792 -
28091597-28091675,28091853-28091908,28092151-28092211,
28092290-28092363,28092865-28092945,28093127-28093201,
28093276-28093395,28093486-28093566,28093644-28093712,
28094057-28094128,28094220-28094362,28094452-28094566,
28094651-28094774,28095124-28095476,28096035-28096374,
28096914-28097124,28097209-28097482,28097570-28097788,
28097868-28098004,28098117-28098375
Length = 980
Score = 32.7 bits (71), Expect = 0.54
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 15 LPNVELSLSEVIELDGCTKSLLNHFIKNPNTLNQRTLIKIQAIIDYMHEKINIGNWKDVK 74
+ NV +SE ++ +G + I P + +AI YM EK NW D K
Sbjct: 559 IDNVTSIISEAVQREGHQVDEFSLEISLPAVIAAND----RAIRLYMKEKYGSANWFDEK 614
Query: 75 LYLRKTITISSYLKLLI 91
++ ++T+++ L++L+
Sbjct: 615 IFSQQTMSVKEALRILL 631
>03_05_1090 +
30313176-30313292,30314162-30314236,30314938-30315181,
30315701-30315787,30315832-30315995,30316587-30316689,
30317751-30317908,30318025-30318105,30318192-30318344
Length = 393
Score = 29.9 bits (64), Expect = 3.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 209 DQNYFLKMAGLRTVAVELGSKYTDSDWTQKL 239
DQN F+ LRTV LG K TD + Q +
Sbjct: 334 DQNGFISPTELRTVMTNLGEKMTDEEVEQMI 364
>06_03_1061 + 27282979-27286854
Length = 1291
Score = 29.5 bits (63), Expect = 5.0
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 170 VDVMDCPSMESFYTNRILKEKPVVLINCMNNWPALTKWNDQNYFLKMAGLRTVAVE---- 225
+ + DCP + S + + K +V+ NC+ +L K D+ YF + L
Sbjct: 1088 LSISDCPQITSLDLSPLRSLKSLVIHNCV----SLRKLFDRQYFTALRDLEVTNASSFAE 1143
Query: 226 -----LGSKYTDSDWTQKLMTVEEFIKDHIYQSNGP 256
LGS+Y ++W Q ++E D N P
Sbjct: 1144 AWSELLGSRY--AEWGQVTTSLESLTVDSTLFLNSP 1177
>01_05_0074 +
17901185-17901258,17901758-17901845,17902195-17902332,
17902820-17903044,17903176-17903358,17903453-17903697,
17905640-17905685,17905784-17905876
Length = 363
Score = 29.5 bits (63), Expect = 5.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 230 YTDSDWTQKLMTVEEFIKDHIYQSNGPKGYLAQYQLFDQI-----PELKADIIEPEYCCF 284
Y W+ L+ +E I Y + +G+L+ Y+L + I P AD PE+C F
Sbjct: 255 YKSDIWSLGLVILECAIGRFPYIPSEGEGWLSFYELLEAIVDQPPPSAPADQFSPEFCAF 314
>01_01_1223 + 9886709-9886784,9887566-9887935,9888028-9888097
Length = 171
Score = 29.5 bits (63), Expect = 5.0
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 209 DQNYFLKMAGLRTVAVELGSKYTDSDWTQKLMTVEEFIKDHIYQSNGPKGY 259
DQN F+ A LR V LG K TD + VEE I++ +G Y
Sbjct: 96 DQNGFISAAELRHVMTNLGEKLTDEE-------VEEMIREADVDGDGQINY 139
>05_04_0036 +
17386160-17386318,17386588-17386651,17387089-17387147,
17387268-17387343,17387521-17387592,17387786-17387873,
17387992-17388250,17388446-17388561,17388876-17389096,
17389196-17389224,17389285-17389420,17389567-17389651,
17389735-17389963
Length = 530
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 126 QLLQKCAGLLNPYSSDYVSEISTNT---IKLKHNEVNVEPNKCNTVPVDVMD 174
+ ++K AG P SDY SE+ TN I L H N + N V + D
Sbjct: 310 ETMKKAAGSRLPLFSDYESELVTNAFDFIGLNHYTSNYVSDNSNAVKAPLQD 361
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.1 bits (62), Expect = 6.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 229 KYTDSDWTQKLMTVEEFIKDHIYQSNGPKGYL 260
KY + KLM V +F KD YQ+ G GYL
Sbjct: 298 KYIAAAPDGKLMVVVKFFKDIKYQTRGRDGYL 329
>01_01_1156 - 9194477-9194485,9194801-9195156,9197783-9197858
Length = 146
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 209 DQNYFLKMAGLRTVAVELGSKYTDSDWTQKL----------MTVEEFIKDH 249
DQN F+ A LR V LG K TD + + + + EEF+KD+
Sbjct: 96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKDY 146
>11_01_0026 + 193383-194566,195726-195972,196099-198063
Length = 1131
Score = 28.7 bits (61), Expect = 8.7
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 97 NNPMDDLLKESYKIIDFGLVFGCPIE-NELQLLQKCAGLLNPYS-SDYVSEISTNTIKLK 154
+NP D + S ++ LV G P E + C+ + S ++ + + LK
Sbjct: 609 DNPDDHVSPSSAAPVETDLVLGTPRECSSKGSSSTCSKRVEDSERSVHLVPKKVDDLNLK 668
Query: 155 HNEVNVEPNKCNTVPVDV 172
H +++V+PN C+ ++V
Sbjct: 669 HPQLSVQPNSCSWSSINV 686
>05_04_0310 + 20114415-20117819
Length = 1134
Score = 28.7 bits (61), Expect = 8.7
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 297 YGPKGTVSPLHHDPKKNLLSQVVGEKQIYLFPPSDSKYLYPHD--HELLSNTAKVD 350
+ P T + L D K +Q+V + + Y Y HD H+L N +++D
Sbjct: 478 FRPDDTKNQLEEDVGKEYFNQLVAQSFFHERKEGRRTYYYIHDLMHDLADNVSRID 533
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.137 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,947,562
Number of Sequences: 37544
Number of extensions: 504076
Number of successful extensions: 1080
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1058
Number of HSP's gapped (non-prelim): 22
length of query: 402
length of database: 14,793,348
effective HSP length: 84
effective length of query: 318
effective length of database: 11,639,652
effective search space: 3701409336
effective search space used: 3701409336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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