GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000459-TA|BGIBMGA000459-PA|IPR013129|Transcription
factor jumonji, IPR003347|Transcription factor jumonji/aspartyl
beta-hydroxylase
         (402 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    27   0.92 
CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein ...    24   6.5  
AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein ...    24   8.5  

>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 27.1 bits (57), Expect = 0.92
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 41  KNPNTLNQRTLIKIQAIIDYMHEKINIGNWKDVKLYLRKTITISSYLKLLIYW 93
           K+ N  N R +  +  +   +    N  +WK + + LR     +S  KLL +W
Sbjct: 571 KSFNRTNGRDMRCLMVVSLDVRNAFNTASWKSIAMALRSKEVPASLQKLLQHW 623


>CR954256-7|CAJ14148.1| 1087|Anopheles gambiae predicted protein
           protein.
          Length = 1087

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 270 PELKADIIEPEYCCFAETE 288
           P+LK  I++P YC   E +
Sbjct: 428 PQLKVLIVDPTYCAVKEAD 446


>AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein S17
           protein.
          Length = 131

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 14  FLPNVELSLSEVIELDGCTKSLLNH 38
           ++P+V     ++IE+D  TK +L H
Sbjct: 84  YVPDVSALEQDIIEVDPETKEMLKH 108


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.137    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,990
Number of Sequences: 2123
Number of extensions: 19349
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 3
length of query: 402
length of database: 516,269
effective HSP length: 65
effective length of query: 337
effective length of database: 378,274
effective search space: 127478338
effective search space used: 127478338
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)