GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000459-TA|BGIBMGA000459-PA|IPR013129|Transcription
factor jumonji, IPR003347|Transcription factor jumonji/aspartyl
beta-hydroxylase
         (402 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    28   0.16 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    28   0.16 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    28   0.16 

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 0.16
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 341 ELLSNTAKVDPREPNYEI--YPEYRHAKAYYCK---LNPGQMLFIPPKWWHFVESLSIS 394
           +L+    K+D  EP Y    + E +   + Y K    NP  + F+P   WH    L +S
Sbjct: 74  QLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVS 132


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 0.16
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 341 ELLSNTAKVDPREPNYEI--YPEYRHAKAYYCK---LNPGQMLFIPPKWWHFVESLSIS 394
           +L+    K+D  EP Y    + E +   + Y K    NP  + F+P   WH    L +S
Sbjct: 90  QLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVS 148


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 0.16
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 341 ELLSNTAKVDPREPNYEI--YPEYRHAKAYYCK---LNPGQMLFIPPKWWHFVESLSIS 394
           +L+    K+D  EP Y    + E +   + Y K    NP  + F+P   WH    L +S
Sbjct: 147 QLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVS 205


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,950
Number of Sequences: 429
Number of extensions: 6092
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 402
length of database: 140,377
effective HSP length: 59
effective length of query: 343
effective length of database: 115,066
effective search space: 39467638
effective search space used: 39467638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)