Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000458-TA|BGIBMGA000458-PA|undefined
         (67 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)             30   0.23 
SB_31694| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            25   8.6  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                25   8.6  
SB_26860| Best HMM Match : Melittin (HMM E-Value=1.5)                  25   8.6  

>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
          Length = 2374

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 9    QVVPEWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQS 55
            +VVP WL S+SS++  + T    + ++ G        T+NG+S +QS
Sbjct: 978  EVVPLWLLSSSSSESEMETPRQASKLRSGGKE--KNQTKNGASLVQS 1022


>SB_31694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 36  IGATNVWHGTTENGSSTLQSMLYYYKREKN 65
           I  T +WH    N  +++ S+LY Y    N
Sbjct: 76  IATTRLWHSLLYNYDTSMNSLLYDYDTSTN 105


>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 6   IVVQVVPEWLASTSSTKQMLRTTTLY----TTIQIGATNVWHGTTENGSSTLQ 54
           I +Q+       T++T ++  +TT      T I+ G T + +GTTE  +ST +
Sbjct: 525 ITIQMTNSTTEMTNNTTEIRNSTTEMKMGTTEIKNGTTKIKNGTTEMTNSTTE 577


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 4/30 (13%)

Query: 27  TTTLYTTIQIG----ATNVWHGTTENGSST 52
           TTT  TTI +G     TNV   T  +GSST
Sbjct: 617 TTTSSTTISVGPTNSCTNVKDSTNTSGSST 646


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 4/30 (13%)

Query: 27  TTTLYTTIQIG----ATNVWHGTTENGSST 52
           TTT  TTI +G     TNV   T  +GSST
Sbjct: 123 TTTSSTTISVGPTNSCTNVKDSTNTSGSST 152


>SB_26860| Best HMM Match : Melittin (HMM E-Value=1.5)
          Length = 595

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 14  WLASTSSTKQMLRTTTLYTTIQIGATNVWH 43
           WL ST ST+++   TTL       ++  WH
Sbjct: 83  WLISTPSTQEVQMWTTLEAQGIAESSQAWH 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.126    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,324
Number of Sequences: 59808
Number of extensions: 47504
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 6
length of query: 67
length of database: 16,821,457
effective HSP length: 46
effective length of query: 21
effective length of database: 14,070,289
effective search space: 295476069
effective search space used: 295476069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)