GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000458-TA|BGIBMGA000458-PA|undefined
         (67 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   0.47 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   0.47 
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   0.47 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    20   1.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    19   4.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    19   4.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    19   5.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    18   7.7  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 0.47
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 12  PEWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSMLYY 59
           P+ +AST+S+        L +   I + N W+  T + S      L Y
Sbjct: 167 PQSVASTASSADHQIVDRLLSHAPIDSANQWYSQTIDNSYQFCDNLQY 214


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 0.47
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 12   PEWLASTSSTKQMLRTTTLYTTIQIGATNVW--HGTT 46
            P W  +T+      R TT  TT +   TN W   GTT
Sbjct: 1050 PWWTTTTTRRTTTTRPTTTSTTTRPTTTN-WPTQGTT 1085



 Score = 18.2 bits (35), Expect = 7.7
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 12   PEWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTT 46
            P+W    S+      T+  +TT     T     TT
Sbjct: 1033 PDWTTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTT 1067


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 0.47
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 12  PEWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSMLYY 59
           P+ +AST+S+        L +   I + N W+  T + S      L Y
Sbjct: 158 PQSVASTASSADHQIVDRLLSHAPIDSANQWYSQTIDNSYQFCDNLQY 205


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 1.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 9   QVVPEWLASTS 19
           Q +PEWL S S
Sbjct: 534 QEIPEWLGSKS 544


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 19.0 bits (37), Expect = 4.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 14  WLASTSSTKQMLRTTTLYTTIQI 36
           W+ S    K+  +T T Y T+++
Sbjct: 235 WMRSQFERKRGRQTYTRYQTLEL 257


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 19.0 bits (37), Expect = 4.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 14  WLASTSSTKQMLRTTTLYTTIQI 36
           W+ S    K+  +T T Y T+++
Sbjct: 237 WMRSQFERKRGRQTYTRYQTLEL 259


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 18.6 bits (36), Expect = 5.8
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 22  KQMLRTTTLYTTIQIGATN 40
           K+M +  T+Y+++Q+   N
Sbjct: 119 KKMRKPRTIYSSLQLQQLN 137


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 18.2 bits (35), Expect = 7.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 49  GSSTLQSMLYYYKRE 63
           GSST +S  +YY ++
Sbjct: 100 GSSTPESPEHYYNQK 114


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.126    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351
Number of Sequences: 317
Number of extensions: 403
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 67
length of database: 114,650
effective HSP length: 44
effective length of query: 23
effective length of database: 100,702
effective search space:  2316146
effective search space used:  2316146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)