Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000458-TA|BGIBMGA000458-PA|undefined
(67 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 0.71
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 1.6
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 24 2.9
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 24 2.9
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 23 6.6
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 23 6.6
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 6.6
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom... 22 8.7
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 22 8.7
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 22 8.7
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 0.71
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 12 PEWLAST-SSTKQMLRTTTLYTT--IQIGATNVWHGTTENGSSTLQS 55
P + ST +ST TT+ TT + + AT + T NG ST+ S
Sbjct: 191 PPTITSTKASTVTSTEATTVTTTTAVTVTATETYTVTATNGGSTITS 237
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 24.6 bits (51), Expect = 1.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 27 TTTLYTTIQIGATNVWHGTTE 47
TT + TT+ GA ++HG T+
Sbjct: 486 TTIIVTTVAFGAFIIFHGKTQ 506
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 23.8 bits (49), Expect = 2.9
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 7 VVQVVPEWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSMLYYYKREKNF 66
+V ++ E S +++ ++ L+ ++ A G++ +S + ++Y YKR KN
Sbjct: 537 IVDIIEEVFNSVEASRYIIVQYGLFALTKLSARL---GSSST-ASRIDKIIYSYKRNKNT 592
Query: 67 E 67
E
Sbjct: 593 E 593
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 23.8 bits (49), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 2 FRRGIVVQVVPEWLASTSSTKQMLRTTTLYTTIQIGATN 40
F RGI V P W +S+T Q L T + T++ A++
Sbjct: 492 FNRGIAGIVPPGWRLVSSNT-QSLSTNSAMTSLYQNASS 529
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 22.6 bits (46), Expect = 6.6
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 12 PEWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSMLYYYKREKNF 66
P ASTS+ K ++ T Y+T TN T N + + + +NF
Sbjct: 74 PRRSASTSAKKNVIPITRSYSTTFFSKTNDQPTVTGNQDKPISRLRASKLQIQNF 128
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 22.6 bits (46), Expect = 6.6
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 3 RRGIVVQVVPEWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQS 55
+R + ++ P L + ++L + +Q+G T V H NG S L S
Sbjct: 1785 QRAVQIEGQPIILTGAPALNKVLGREVYTSNLQLGGTQVMH---RNGISHLTS 1834
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 22.6 bits (46), Expect = 6.6
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 16 ASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSMLYYYKRE 63
AS+S+TK + TT+ ++ ++ G+ST + ++ KRE
Sbjct: 166 ASSSTTKAVEATTSKASSAHTDTLATSASNSDRGASTPEMVVKAEKRE 213
>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 287
Score = 22.2 bits (45), Expect = 8.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 1 MFRRGIVVQVVPEWLASTSSTKQMLRTTTLYTTI 34
+F + QVV S+SS LRTT +YT +
Sbjct: 8 VFLFSLFFQVVLGDYFSSSSGNPNLRTTKVYTVV 41
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 22.2 bits (45), Expect = 8.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 13 EWLASTSSTKQMLRTTTL 30
EWL TS T ++LR L
Sbjct: 570 EWLLITSQTDELLRFANL 587
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 22.2 bits (45), Expect = 8.7
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 10 VVPEWLASTSSTKQMLRTTTLYTTIQI 36
++P++LA S + R TT++ +I
Sbjct: 480 IIPKFLAMRSHPNYLYRMTTIFAISEI 506
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.126 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,484
Number of Sequences: 5004
Number of extensions: 6990
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 11
length of query: 67
length of database: 2,362,478
effective HSP length: 47
effective length of query: 20
effective length of database: 2,127,290
effective search space: 42545800
effective search space used: 42545800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)
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