GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000458-TA|BGIBMGA000458-PA|undefined
         (67 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0810 + 7429834-7429960,7430534-7430696,7430796-7430844,743...    26   3.3  
07_03_0852 - 22020159-22021388                                         26   3.3  
04_04_0180 - 23356802-23356843,23357681-23358201,23358283-233583...    26   4.3  
11_01_0788 + 6599962-6602700                                           25   7.6  
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817...    25   7.6  
06_03_0921 + 25949453-25949986,25950150-25950188,25950380-259504...    25   10.0 
01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845     25   10.0 
01_06_1490 - 37732724-37735020,37735803-37735980                       25   10.0 

>12_01_0810 +
           7429834-7429960,7430534-7430696,7430796-7430844,
           7431203-7431385,7431824-7431898,7431963-7432148,
           7432362-7432450,7432892-7433444
          Length = 474

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 13  EWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSMLYYY 60
           ++L  TS  + ++    +    ++GA  V HG T  G+  ++  L +Y
Sbjct: 160 KYLLGTSMARPVIAKAMVDVAKEVGADAVAHGCTGKGNDQVRFELTFY 207


>07_03_0852 - 22020159-22021388
          Length = 409

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 1   MFRRGIVVQVVPEWLASTSSTKQMLRTTTLYTTI 34
           +FRR +++  +P+ LA+ S+ +Q  R  T +  I
Sbjct: 146 LFRRHLLLPQIPQDLAAASALRQSRRGDTFFAPI 179


>04_04_0180 -
           23356802-23356843,23357681-23358201,23358283-23358361,
           23358470-23358472
          Length = 214

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 27  TTTLYTTIQIGATNVWHGTTENGSSTLQSMLYYYKREKN 65
           TTT  T    GA   W G  +  SS+ Q+ LYY +   N
Sbjct: 138 TTTTATAASPGAAR-WPGGEQYRSSSPQAALYYPRNPPN 175


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 13  EWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSMLYYYKREKN 65
           ++L      +++L T  LY++ Q        G    G + L + +Y Y+REKN
Sbjct: 166 DYLVGIEGNRKLL-TEWLYSSEQGNTVITVSGMGGLGKTALVNNVYEYEREKN 217


>01_03_0255 -
           14281004-14281066,14281114-14281203,14281672-14281737,
           14281837-14281907,14282021-14282153,14282245-14283898,
           14285346-14285935
          Length = 888

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 5   GIVVQVVPEWLASTSSTKQMLRT 27
           G V  V+PEW   ++ST  M  T
Sbjct: 146 GFVDDVIPEWFGGSASTTPMKPT 168


>06_03_0921 +
           25949453-25949986,25950150-25950188,25950380-25950445,
           25950526-25950669,25951416-25951612,25952281-25952443,
           25952760-25952873,25953304-25953401,25953964-25954042,
           25954356-25954514,25954690-25954779,25955790-25955923,
           25956513-25956672,25956826-25956909,25957000-25957167,
           25957321-25957446,25958088-25958225,25958311-25958414,
           25958832-25958895,25959229-25959317,25959393-25959534,
           25959937-25960000,25960085-25960152,25960399-25960521,
           25960604-25960669,25960857-25960962,25961076-25961167,
           25961243-25961344
          Length = 1170

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 4   RGIVVQVVPEWLASTSSTKQMLRTTTLYTTIQIG-ATNVW 42
           RGIV + V EW A  + T + +     Y T+ I    +VW
Sbjct: 122 RGIVTKYVAEWEAVVTRTGRWIDFKDDYKTMDINFMESVW 161


>01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845
          Length = 767

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 4   RGIVVQVVPEWLASTSST 21
           RG V  + PEW+A T+ T
Sbjct: 615 RGTVGYIAPEWIAGTAVT 632


>01_06_1490 - 37732724-37735020,37735803-37735980
          Length = 824

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 4   RGIVVQVVPEWLASTSST 21
           RG V  + PEW+A T+ T
Sbjct: 661 RGTVGYIAPEWIAGTAVT 678


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.126    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,404
Number of Sequences: 37544
Number of extensions: 37889
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 8
length of query: 67
length of database: 14,793,348
effective HSP length: 47
effective length of query: 20
effective length of database: 13,028,780
effective search space: 260575600
effective search space used: 260575600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)