GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000458-TA|BGIBMGA000458-PA|undefined
         (67 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003507-1|AAO39511.1|  807|Drosophila melanogaster RE34115p pro...    27   3.2  
AE013599-236|AAM70834.1|  807|Drosophila melanogaster CG15236-PB...    27   3.2  
AE013599-235|AAF57401.2|  807|Drosophila melanogaster CG15236-PA...    27   3.2  

>BT003507-1|AAO39511.1|  807|Drosophila melanogaster RE34115p
           protein.
          Length = 807

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 16  ASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSM 56
           A+T++TK     TT  TT +   T    GT E  +STL  M
Sbjct: 509 ATTTTTKTSKTKTTTATTGRTTTTTTATGTNEMVTSTLSGM 549


>AE013599-236|AAM70834.1|  807|Drosophila melanogaster CG15236-PB,
           isoform B protein.
          Length = 807

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 16  ASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSM 56
           A+T++TK     TT  TT +   T    GT E  +STL  M
Sbjct: 509 ATTTTTKTSKTKTTTATTGRTTTTTTATGTNEMVTSTLSGM 549


>AE013599-235|AAF57401.2|  807|Drosophila melanogaster CG15236-PA,
           isoform A protein.
          Length = 807

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 16  ASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSM 56
           A+T++TK     TT  TT +   T    GT E  +STL  M
Sbjct: 509 ATTTTTKTSKTKTTTATTGRTTTTTTATGTNEMVTSTLSGM 549


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.126    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,145
Number of Sequences: 52641
Number of extensions: 71266
Number of successful extensions: 298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 3
length of query: 67
length of database: 24,830,863
effective HSP length: 47
effective length of query: 20
effective length of database: 22,356,736
effective search space: 447134720
effective search space used: 447134720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)