Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000458-TA|BGIBMGA000458-PA|undefined
(67 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 29 0.53
AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta... 26 3.7
AC087081-12|AAK66039.2| 324|Caenorhabditis elegans Hypothetical... 25 5.0
AC087081-11|AAK66034.2| 328|Caenorhabditis elegans Hypothetical... 25 6.5
Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical pr... 25 8.7
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 25 8.7
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 25 8.7
AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel... 25 8.7
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 25 8.7
AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologou... 25 8.7
AF016657-10|AAB93662.1| 217|Caenorhabditis elegans Hypothetical... 25 8.7
AF016418-10|AAK18896.1| 611|Caenorhabditis elegans Hypothetical... 25 8.7
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 28.7 bits (61), Expect = 0.53
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 11 VPEWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSM 56
VP + STSS R TT TT++ T V T +GSS+ +S+
Sbjct: 457 VPTSIRSTSSA----RPTTYSTTVKSSTTTVSTSTRHDGSSSSESL 498
>AF003136-1|AAK21379.3| 896|Caenorhabditis elegans Importin beta
family protein 1 protein.
Length = 896
Score = 25.8 bits (54), Expect = 3.7
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 4 RGIVVQVVPEWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSMLYYYKRE 63
R I++QVV E STSS+ Q ++ L ++I H + GS+ Q L K +
Sbjct: 221 RNIIMQVVCE---STSSSDQRVKVAALQCLVRIMQLYYEHMLSYMGSALFQITLSAMKSQ 277
Query: 64 K 64
+
Sbjct: 278 E 278
>AC087081-12|AAK66039.2| 324|Caenorhabditis elegans Hypothetical
protein Y82E9BL.17 protein.
Length = 324
Score = 25.4 bits (53), Expect = 5.0
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 5 GIVVQVVPEWLASTSSTKQMLRTTTLYTTIQIGATN 40
G + ++P W +S+S +++++ + I + A N
Sbjct: 3 GCFINILPNWFSSSSKRRRIIQQESPLLNIPLDAAN 38
>AC087081-11|AAK66034.2| 328|Caenorhabditis elegans Hypothetical
protein Y82E9BL.7 protein.
Length = 328
Score = 25.0 bits (52), Expect = 6.5
Identities = 8/36 (22%), Positives = 22/36 (61%)
Query: 5 GIVVQVVPEWLASTSSTKQMLRTTTLYTTIQIGATN 40
G + ++P+W++S+S+ ++ L+ + +I + N
Sbjct: 3 GCFIDILPKWISSSSNRQKNLQQESPLLSIPLDVAN 38
>Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical
protein K01A11.4 protein.
Length = 854
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 42 WHGTTENGSSTLQSMLYYYKREKN 65
WH EN LQ+M Y+YK K+
Sbjct: 41 WH---ENDQVVLQAMAYFYKAVKS 61
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 24.6 bits (51), Expect = 8.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 17 STSSTKQMLRTTTLYTTIQIGATN-VWHGTTENGSSTLQSML 57
ST++T Q + TT TT A N W TT ++T Q ++
Sbjct: 271 STNTTTQGVTTTVGKTTTVTTAQNSTWAATTTASNTTTQPVV 312
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 24.6 bits (51), Expect = 8.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 7 VVQVVPEWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSST 52
VV VP A+++ST TTT +T T V + T S+T
Sbjct: 278 VVTTVPTTTATSTSTSTASTTTTTPST-STHTTTVTYSTNATSSTT 322
>AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel
protein protein.
Length = 854
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 42 WHGTTENGSSTLQSMLYYYKREKN 65
WH EN LQ+M Y+YK K+
Sbjct: 41 WH---ENDQVVLQAMAYFYKAVKS 61
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 24.6 bits (51), Expect = 8.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 7 VVQVVPEWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSST 52
VV VP A+++ST TTT +T T V + T S+T
Sbjct: 260 VVTTVPTTTATSTSTSTASTTTTTPST-STHTTTVTYSTNATSSTT 304
>AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 854
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 42 WHGTTENGSSTLQSMLYYYKREKN 65
WH EN LQ+M Y+YK K+
Sbjct: 41 WH---ENDQVVLQAMAYFYKAVKS 61
>AF016657-10|AAB93662.1| 217|Caenorhabditis elegans Hypothetical
protein C16C4.9 protein.
Length = 217
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 43 HGTTENGSSTLQSMLYYYKREKNF 66
H T EN SS + YY K EK F
Sbjct: 93 HHTVENVSSIEEGGHYYTKTEKRF 116
>AF016418-10|AAK18896.1| 611|Caenorhabditis elegans Hypothetical
protein C49G7.1 protein.
Length = 611
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 43 HGTTENGSSTLQS-MLYYYKREKNFE 67
+G TE+G T ++ LYYY K FE
Sbjct: 233 YGCTEHGRKTFKTYYLYYYGSIKAFE 258
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.126 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,758
Number of Sequences: 27539
Number of extensions: 38579
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 18
length of query: 67
length of database: 12,573,161
effective HSP length: 47
effective length of query: 20
effective length of database: 11,278,828
effective search space: 225576560
effective search space used: 225576560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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