GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000458-TA|BGIBMGA000458-PA|undefined
         (67 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17420.1 68416.m02225 protein kinase family protein contains ...    27   2.0  
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    26   2.7  
At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein ...    25   4.7  
At4g24830.1 68417.m03557 arginosuccinate synthase family contain...    25   4.7  
At3g15250.1 68416.m01926 expressed protein ; expression supporte...    25   6.2  

>At3g17420.1 68416.m02225 protein kinase family protein contains
          protein kinase domain, Pfam:PF00069; contains
          serine/threonine protein kinase domain,
          INTERPRO:IPR002290
          Length = 467

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 1  MFRRGIVVQVVPEWLASTSSTKQMLRTTTLYT-----TIQIGATNVWHGTTENGSSTLQS 55
          +F   IV+ V+  WL+    +K+   TT   T     T +I   +V HG++ N  ++ Q+
Sbjct: 26 LFAAFIVILVLSVWLSFRKKSKRSNATTLPVTQSPRFTEEIKEISVDHGSSNNNGTSYQT 85

Query: 56 M 56
          +
Sbjct: 86 L 86


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
            (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 5    GIVVQVVPEWLASTSSTKQMLR 26
            G +  V+P WL+ T S +Q+L+
Sbjct: 1203 GFISMVIPFWLSKTKSEEQLLQ 1224


>At5g44160.1 68418.m05404 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 466

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 16  ASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQS 55
           A+ +S   M  T  L    +IGAT+     T + S+ LQS
Sbjct: 328 ANANSNVNMSATALLQKAAEIGATSTTTAATNDPSTFLQS 367


>At4g24830.1 68417.m03557 arginosuccinate synthase family contains
           Pfam profile: PF00764 arginosuccinate synthase
          Length = 494

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 13  EWLASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQSMLYYY 60
           ++L  TS  + ++    +    ++GA  V HG T  G+  ++  L ++
Sbjct: 180 KYLLGTSMARPVIAKAMVDVAAEVGADAVAHGCTGKGNDQVRFELTFF 227


>At3g15250.1 68416.m01926 expressed protein ; expression supported
          by MPSS
          Length = 217

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 16 ASTSSTKQMLRTTTLYTTIQIGATNVWHGTTENGSSTLQS 55
          AS+  TK+ + +TT   T +  +TN       N SST QS
Sbjct: 55 ASSIYTKRSISSTTSEYTSRCNSTNSSSSFGSNNSSTSQS 94


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.126    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,325,761
Number of Sequences: 28952
Number of extensions: 32636
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 5
length of query: 67
length of database: 12,070,560
effective HSP length: 47
effective length of query: 20
effective length of database: 10,709,816
effective search space: 214196320
effective search space used: 214196320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)