GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000457-TA|BGIBMGA000457-PA|IPR002007|Haem peroxidase,
animal, IPR010255|Haem peroxidase
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0517 - 11125596-11126234,11126271-11126432                       32   0.91 
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    32   1.2  
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306     32   1.2  
04_03_0147 - 11853940-11854128,11854933-11855013,11855501-118555...    31   2.8  
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076...    29   6.4  
02_02_0677 + 12859101-12859413,12862450-12862817                       29   8.5  

>02_02_0517 - 11125596-11126234,11126271-11126432
          Length = 266

 Score = 32.3 bits (70), Expect = 0.91
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)

Query: 335 LAVDDIMSTLTRGSYYQATGKADFTVDPDISNVGLGPVQEVFDIPTADLAKGRYFGLPSY 394
           LAVD + +TL RGSY+ + G   F     +     GP+  +F    A +    YF     
Sbjct: 183 LAVDYVTATLNRGSYFWSLGARAFYFSCPVFLWLFGPI-PMF-AACAAMVCALYF----- 235

Query: 395 TKYRDFCSGYSKKHVDFDDLTDHISDEKIRQLK 427
               D C  + ++H D D+     SDE+  + K
Sbjct: 236 ---LDVCDDWEEEHQDHDEQDGSGSDERSGEAK 265


>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 408 HVDFDDLTDHISDEKIRQLKQVYETTEDIELMAEQLQEIRKASLALLLCYVGDDVEKI 465
           HV   +L D +  EK+RQ + V E    +E+  E   E  K SL   LC    +VE++
Sbjct: 675 HVIVKELEDEVEKEKMRQEELVAE----LEMKMETAVEAIKESLEAQLCAANTEVERL 728


>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
          Length = 387

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 2   SFLPISILIILVVNLAKAVYYDSWEGFQFRLTSSGKEYSLARHIKNNLLTVGLATDAKLT 61
           SF P+ ++  + VN A  V  +S E     L+SS ++ +L   +   L+         + 
Sbjct: 221 SFAPVHVVPAVQVNEAFEVARNSVELLSTVLSSSPQKEALKDDLTTTLVQQCQQCQRTIQ 280

Query: 62  QLASYYG--EFMAVDVTSTHDILNFVVNKPYCCKEEGKSDPMCDPNFIP 108
           ++    G  E    +  S HD L  V++K    KE   ++P  +P  IP
Sbjct: 281 RIIETAGDNEAQLFEALSVHDELEKVLSKYKELKEPVVAEPEAEPAMIP 329


>04_03_0147 -
           11853940-11854128,11854933-11855013,11855501-11855584,
           11855663-11855735,11855888-11855949,11856246-11856327,
           11857643-11858262
          Length = 396

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 317 FNLIKEVPMVNFSLSVQSLAVDDIMSTLTRGSYYQATGKADFTVDPDISNVGLGPV-QEV 375
           F L+++ P V F+L+     +D + +++ +G++    G+A +    ++    LG V  EV
Sbjct: 212 FALLRDFPDVQFTLNGGITTIDQVTASIRQGAHRVMVGRAAYNNPWNM----LGHVDSEV 267

Query: 376 FDIPTADLAKGRYFGLPSYTKYRDFCSG 403
           + +PT   ++ +   L SY  Y D   G
Sbjct: 268 YGMPTRRSSRRQI--LESYQVYGDSIMG 293


>04_04_1677 +
           35306232-35306328,35306697-35307248,35307324-35307608,
           35308035-35308296,35308378-35308430,35308520-35308587,
           35310331-35310420,35310502-35310586,35310822-35311254,
           35312872-35313439,35313527-35314000
          Length = 988

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 71  MAVDVTSTHDILNFVVNKPYCCKEEGKSDPMCDPNFI 107
           +A+DV +  + L+F  N P C ++   S+ + D NF+
Sbjct: 431 IAMDVANALEYLHFFCNPPLCHRDIKSSNILLDENFV 467


>02_02_0677 + 12859101-12859413,12862450-12862817
          Length = 226

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 420 DEKIRQLK-QVYETTEDIELMAEQLQEIRKASLALLLCY 457
           +E +++LK QV E TE++ +  ++   IRK S +LLL Y
Sbjct: 163 NEDMKKLKLQVQEKTEEVHVAEDKALAIRKQSESLLLEY 201


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,031,590
Number of Sequences: 37544
Number of extensions: 583904
Number of successful extensions: 1150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 6
length of query: 497
length of database: 14,793,348
effective HSP length: 85
effective length of query: 412
effective length of database: 11,602,108
effective search space: 4780068496
effective search space used: 4780068496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)