GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000457-TA|BGIBMGA000457-PA|IPR002007|Haem peroxidase,
animal, IPR010255|Haem peroxidase
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase, ...    36   0.082
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine...    34   0.25 
At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi...    31   2.3  
At5g15630.1 68418.m01829 phytochelatin synthetase family protein...    30   3.1  
At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family prot...    30   4.1  
At2g40390.1 68415.m04980 expressed protein                             30   4.1  
At1g73920.2 68414.m08561 lipase family protein similar to lipase...    29   5.4  
At1g73920.1 68414.m08560 lipase family protein similar to lipase...    29   5.4  
At1g18460.1 68414.m02303 lipase family protein similar to triacy...    29   7.1  

>At1g73680.1 68414.m08532 pathogen-responsive alpha-dioxygenase,
           putative similar to pathogen-inducible alpha-dioxygenase
           [Nicotiana attenuata] GI:12539609; contains Pfam profile
           PF03098: Animal haem peroxidase
          Length = 631

 Score = 35.5 bits (78), Expect = 0.082
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 216 GSNLFTTWFWRFHNYVAQQLANLNPSWDDERLFYTARDIVVAFHLQMFYYEYLPEVLGKD 275
           G +L    F + HN V   L    P +DDE+L+ TAR +  A   ++   ++  E+L  D
Sbjct: 263 GFSLLQALFVKEHNSVCDMLKERYPDFDDEKLYRTARLVTAAVIAKVHTIDWTIELLKTD 322


>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
           deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
           similar to cytidine deaminase (CDD) [Arabidopsis
           thaliana] GI:3046700; contains Pfam profile PF00383:
           Cytidine and deoxycytidylate deaminase zinc-binding
          Length = 293

 Score = 33.9 bits (74), Expect = 0.25
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 277 MIEDEIILCNSTGFRDIYDD--TVVPQIALEYAYANRLLDKNFNLIKEVPMVNFSL 330
           M + +I+L N TG +  Y +  T +PQ  +  A   RLL++NFN I+   ++N SL
Sbjct: 120 MSDTKILLTNPTGQKGTYMNLSTFLPQGLISQANVPRLLERNFNCIE---LINHSL 172


>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 958

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 349 YYQATGKADFTVDPDISNVGLGPVQEVFDIPTADLAKGR 387
           + +A   AD T+DPD SN  +  +QE    P+  L KG+
Sbjct: 742 FLKAYALADSTLDPDSSNYVIQLLQEALKCPSDGLRKGQ 780


>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL4 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 431

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 24  SWEGFQFRLTSSGKEYSLARHIKNNLLTVGLATDAKLTQLASYYGEFMAVDVTSTHDILN 83
           SW    +  T +   + + RHI+N   T+G  T AK   + S  G       T   D   
Sbjct: 38  SWTADGYVATVTMNNFQIYRHIQNPGWTLGW-TWAKKEVIWSMVG----AQTTEQGDCSK 92

Query: 84  FVVNKPYCCKE 94
           F  N P+CCK+
Sbjct: 93  FKGNVPHCCKK 103


>At3g16370.1 68416.m02071 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00657 Lipase
           Acylhydrolase with GDSL-like motif
          Length = 353

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 161 TAGSLNLVRSYEGGQLKYEVVNGRQFPSDASDNTTCFIKQAISTGCTR 208
           +AGS + V++Y    L Y+V     + S   DN + FIKQ  + G  +
Sbjct: 165 SAGSSDFVQNYYVNPLLYKVYTVDAYGSFLIDNFSTFIKQVYAVGARK 212


>At2g40390.1 68415.m04980 expressed protein
          Length = 496

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 211 PTGVLGSNLFTTWFWRFHNY---VAQQLANLNPSWDDERLFYT 250
           P+ +      T   W+ H Y   VA ++ ++N S +DERLF++
Sbjct: 209 PSPLFSYAFSTQGLWKVHMYCPVVAMEMESVNSSLNDERLFFS 251


>At1g73920.2 68414.m08561 lipase family protein similar to lipase
           GB:CAA74737 [SP|O46108] from [Drosophila melanogaster]
          Length = 635

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 390 GLPSYTKYR---DFCSGYSKKHVDFDDLTDHISDEKIRQLKQVYETTEDIELMAEQLQEI 446
           G P++  Y    D   G  +  V  D +  +IS ++  +       TEDI  M E++ EI
Sbjct: 285 GSPAFAAYDQGYDVFLGNFRGLVSRDHVNKNISSKEFWRYSINEHGTEDIPAMIEKIHEI 344

Query: 447 RKASLALLLCYVGDDVEKIQP 467
           +   L L    + +++ + +P
Sbjct: 345 KTTELKLCQPNIDEEINQEEP 365


>At1g73920.1 68414.m08560 lipase family protein similar to lipase
           GB:CAA74737 [SP|O46108] from [Drosophila melanogaster]
          Length = 704

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 390 GLPSYTKYR---DFCSGYSKKHVDFDDLTDHISDEKIRQLKQVYETTEDIELMAEQLQEI 446
           G P++  Y    D   G  +  V  D +  +IS ++  +       TEDI  M E++ EI
Sbjct: 354 GSPAFAAYDQGYDVFLGNFRGLVSRDHVNKNISSKEFWRYSINEHGTEDIPAMIEKIHEI 413

Query: 447 RKASLALLLCYVGDDVEKIQP 467
           +   L L    + +++ + +P
Sbjct: 414 KTTELKLCQPNIDEEINQEEP 434


>At1g18460.1 68414.m02303 lipase family protein similar to
           triacylglycerol lipase, gastric precursor (EC 3.1.1.3)
           {Canis familiaris} [SP|P80035]
          Length = 701

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 390 GLPSYTKYR---DFCSGYSKKHVDFDDLTDHISDEKIRQLKQVYETTEDIELMAEQLQEI 446
           G P++  Y    D   G  +  V  D +  +IS +   +       TEDI  M E++ EI
Sbjct: 352 GSPAFAAYDQGYDVFLGNFRGLVSRDHVKKNISSKDFWRYSINEHATEDIPAMIEKIHEI 411

Query: 447 RKASLALLLCYVGDDVEKIQPKAFVIV 473
           + + L L    + + V + QP    +V
Sbjct: 412 KTSELKLYQPTMEEVVNEDQPYKLCVV 438


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,923,589
Number of Sequences: 28952
Number of extensions: 511467
Number of successful extensions: 1119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 9
length of query: 497
length of database: 12,070,560
effective HSP length: 84
effective length of query: 413
effective length of database: 9,638,592
effective search space: 3980738496
effective search space used: 3980738496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)