GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000456-TA|BGIBMGA000456-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like, IPR000209|Peptidase S8 and S53, subtilisin,
kexin, sedolisin
         (1448 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.36 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   1.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   5.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   7.8  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   7.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   7.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   7.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 1000 LQATLNGHIGHITCVTFSPNNLLVLSGSEDRTVVVWQLADNS 1041
            LQ  L G IG++T +      +L LSG+   T  VWQ+  N+
Sbjct: 873  LQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNA 914


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 453 LRDAHSDLAALHFSSFLNDADDTDTSEAHELGCVDDDDALLDSTPFHSASRTAAAFTQRH 512
           L+ A  D       +F   A DT  + A E  C+DDDD LL+       S   +A T R 
Sbjct: 639 LKLAQGDEMCGQEQAFRKWAADT-FAVACETFCLDDDDTLLE-VALSLGSEALSAATVRF 696

Query: 513 VEESWLHLLLAGDFSKLKDLTVCN 536
           +E     +  A      +++T CN
Sbjct: 697 IEAEPQPIGKALSKCHNRNVTTCN 720


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
            75 protein.
          Length = 900

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 1395 AQSQHFDQLEALWNKISPPRRRSNKSLSKQSSLIERFDSSDEEHTPVEEQDVA 1447
            AQ QH  Q +   + I+  + +  +   +Q    ++     ++H P+EE+  A
Sbjct: 420  AQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAA 472


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/22 (59%), Positives = 13/22 (59%)

Query: 167 RHPPVLIYGPDASGKTTLLTHL 188
           RHP V I G    GKTTLL  L
Sbjct: 144 RHPIVTIMGHVDHGKTTLLDAL 165


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 516 SWLHLLLAGDFSKLKDLTVCNFDFLLAAVQT 546
           +W  L+LAG F+ L  +T+     ++AAV T
Sbjct: 34  NWTDLVLAGLFTMLIIVTIVGNTLVIAAVIT 64


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 791 NIFITGSQ-DGTVCTWNVENFT-LLSTVTAGVPIHIF 825
           NIF  G   D TV T+N+ N T LL  +  G  + IF
Sbjct: 197 NIFPRGELFDATVFTYNITNSTPLLKKLYGGPLLRIF 233


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 735 HIAPVLCVAAIVNRSLVISGGDDSAVIITSLVDGAL 770
           H   + CV A++   +VIS G D+   + ++V GA+
Sbjct: 306 HWTVMRCVQAMIAGIVVISAGADAYPPLAAIVLGAI 341


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 791 NIFITGSQ-DGTVCTWNVENFT-LLSTVTAGVPIHIF 825
           NIF  G   D TV T+N+ N T LL  +  G  + IF
Sbjct: 212 NIFPRGELFDATVFTYNITNSTPLLKKLYGGPLLRIF 248


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 374,916
Number of Sequences: 429
Number of extensions: 15172
Number of successful extensions: 44
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 10
length of query: 1448
length of database: 140,377
effective HSP length: 67
effective length of query: 1381
effective length of database: 111,634
effective search space: 154166554
effective search space used: 154166554
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)