GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000455-TA|BGIBMGA000455-PA|undefined
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    31   0.067
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    28   0.36 
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   4.4  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   5.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   5.8  

>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 30.7 bits (66), Expect = 0.067
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 65  CLFGGDASLYHPVLPYKIPSDIFEQMVISETAQADLVRACYRLSSDGIYHLEDD 118
           C    D+SLY   L   I   I  ++  S+    DL++  +  S+DG+  L++D
Sbjct: 270 CYISDDSSLYSVSLARDITEAIQNKLNFSDVNFGDLLKKPHDFSADGLLSLQND 323


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 28.3 bits (60), Expect = 0.36
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 47  LEIVGPELQSTYDDRYIECLFGG 69
           +E+V P+L + +D+R +E L GG
Sbjct: 645 VELVSPDLVNVFDERELELLIGG 667


>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 39  FREERRQILEIVGPELQSTYDDRYIECLFGGDASL 73
           + EERR+I E+  PEL++++        + GD  +
Sbjct: 156 WEEERRRIWELHSPELRASFSTPPSYSKYQGDVKV 190


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 48  EIVGPELQSTYDDRYIECLFGG 69
           E++  EL + +D+R +E L GG
Sbjct: 627 ELIPQELINVFDERELELLIGG 648


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 1496

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 66 LFGGDASLYHPVLPYKIPSDIFE 88
          LF  DA L + ++P   P DIFE
Sbjct: 14 LFPNDAVLNYDLVPSAKPGDIFE 36


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,951
Number of Sequences: 5004
Number of extensions: 22103
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 5
length of query: 121
length of database: 2,362,478
effective HSP length: 65
effective length of query: 56
effective length of database: 2,037,218
effective search space: 114084208
effective search space used: 114084208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)