Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000455-TA|BGIBMGA000455-PA|undefined
(121 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0706 + 10554672-10555778 31 0.25
02_05_0809 + 31928069-31928385,31929220-31929877 27 3.1
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 27 5.4
08_02_1210 + 25314569-25314596,25315271-25315455,25315539-253156... 26 7.1
04_01_0014 - 231228-233179,233522-233714 26 7.1
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 26 7.1
08_01_0240 + 2001799-2001966,2002105-2002189,2002356-2002496,200... 26 9.4
05_03_0603 - 16117695-16118396,16118679-16118939,16120100-161201... 26 9.4
03_02_0845 - 11700830-11701327 26 9.4
02_02_0658 + 12720873-12720906,12721201-12721664,12723069-127232... 26 9.4
>03_02_0706 + 10554672-10555778
Length = 368
Score = 31.1 bits (67), Expect = 0.25
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 57 TYDDRYIECLFGGDASLYHPVLPYKIPSDIFEQMVISETAQADLVRACYRLSSDGIYHLE 116
T D+ Y+ G A+++ V P +F ++S+ A DLVRA + +Y+ +
Sbjct: 87 TLDEEYLR---GSVAAVHSVVQHATCPESVFFHFLVSDPALGDLVRAVFPQLQFKVYYFD 143
Query: 117 DD 118
D
Sbjct: 144 PD 145
>02_05_0809 + 31928069-31928385,31929220-31929877
Length = 324
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 34 SVYNDFREERRQILEIVGPELQSTYDDRYI-ECL-FGGDASLY 74
+V + F +ER L ++GP + +++ Y+ EC + D+S+Y
Sbjct: 228 AVDDKFLQERHPGLRVLGPGVDDCFENSYLEECSDYSDDSSIY 270
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 80 YKIPSDIFEQMVISETAQADLVRACYRLSSDGIYHL 115
Y + D F Q+ + + L +C RL +D IYH+
Sbjct: 917 YIVVLDTFAQLRFPPSGTSSLDFSCRRLFADAIYHV 952
>08_02_1210 +
25314569-25314596,25315271-25315455,25315539-25315648,
25315756-25315909,25316213-25316237,25316566-25316756,
25316837-25316899,25317012-25317075,25318078-25318109
Length = 283
Score = 26.2 bits (55), Expect = 7.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 53 ELQSTYDDRYIECLFGGDASLYHPVLPYKIPSDIFEQMVISETAQADLVRACYRLSSDGI 112
+L TY R +F G+ SL P L + +I + I + A ++RA +++ SD I
Sbjct: 14 DLPPTYQPRGPRVIFNGNGSLPQPNLHSNVDREIRQ---IEQQAYTGVLRA-FKVQSDAI 69
>04_01_0014 - 231228-233179,233522-233714
Length = 714
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 63 IECLFGGD----ASLYHPVLPYKIPSDIFEQMVISETAQADLVRACYRLSSDGIYHLEDD 118
++C G+ A ++HP+ K+P D + + T Q+ +AC S Y +++
Sbjct: 255 LDCTISGNRTSSADMFHPIAHVKLPYD--SESIQDATTQSKCAQACLSSCSCTAYSYQNN 312
>01_07_0306 +
42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 44 RQILEIVGPELQSTYDDR-YIECLFGGDASLYHPVLPYKIPSD 85
R+ ++I+ P ++T + + E LFGG ASL H + I D
Sbjct: 738 RESIDILSPNDENTASQKTHAEELFGGMASLTHKLFSAFIVED 780
>08_01_0240 +
2001799-2001966,2002105-2002189,2002356-2002496,
2002653-2002766,2002880-2002977,2003081-2003160,
2003274-2003379,2003491-2003618,2004411-2004552,
2004655-2004711,2004892-2005032
Length = 419
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 19 SDKWPGPRAVKIFVASVYNDFREERRQILEIVGPELQSTYDDRYIECLFGGDASLY 74
S++W G R+ Q + I+G L DD I C GDA+ +
Sbjct: 80 SNEWTGKRSFSGQSLHKIGSTPNPYEQAISIIGKTLAPFDDDNLIPCFGFGDATTH 135
>05_03_0603 -
16117695-16118396,16118679-16118939,16120100-16120144,
16120362-16120453,16120568-16120706,16121027-16121063,
16121147-16121434,16122000-16122074,16122505-16122581,
16123092-16123256,16123387-16123543,16124558-16124733,
16124828-16124940,16125398-16125428,16126487-16126605,
16126696-16126789,16127384-16127458,16127548-16127666,
16127751-16127907,16129252-16129398
Length = 1022
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 75 HPVLPYKIPSD--IFEQMVISETAQADLVRACYRLSSDGIYHLED 117
HP PY + I E+M + A + + A +L SD I+H +D
Sbjct: 42 HPTSPYVLALKGLILERMGKPDEALSVCLNAKEQLYSDNIFHFDD 86
>03_02_0845 - 11700830-11701327
Length = 165
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 77 VLPYKIPSDIFEQMVISETAQADLVRACYR 106
V P + + ++E + + ETA A+ ++A YR
Sbjct: 46 VAPERRAATMYEVLAVEETAGAEEIKAAYR 75
>02_02_0658 +
12720873-12720906,12721201-12721664,12723069-12723227,
12723308-12723424,12723570-12723721,12724594-12724685,
12724787-12725464,12725551-12725803,12725804-12725888,
12725969-12726037,12726489-12726668,12726989-12726994,
12727526-12727624
Length = 795
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 31 FVASVYNDFREERRQILEIVGPELQSTYDDRYI 63
FVA + +FR +LE++ + TYD Y+
Sbjct: 641 FVAHILLNFRYTSNMLLEVIDETHEGTYDFFYL 673
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.138 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,815,402
Number of Sequences: 37544
Number of extensions: 145510
Number of successful extensions: 275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 271
Number of HSP's gapped (non-prelim): 10
length of query: 121
length of database: 14,793,348
effective HSP length: 74
effective length of query: 47
effective length of database: 12,015,092
effective search space: 564709324
effective search space used: 564709324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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