Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000455-TA|BGIBMGA000455-PA|undefined
(121 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015) 33 0.048
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 30 0.45
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7) 27 4.2
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_35561| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00092) 27 4.2
SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12) 27 5.5
SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28) 26 9.7
SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 26 9.7
SB_31418| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
Length = 1238
Score = 33.5 bits (73), Expect = 0.048
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 24 GPRAVKIFVASVYNDFREERRQILEIVGPELQSTYDDR---YIEC 65
G + +++FV+S + DF EER +++ + P+L+ ++R +EC
Sbjct: 202 GWKTIRLFVSSTFRDFHEEREVLVKEIFPDLRLWCEERKLHLVEC 246
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 30.3 bits (65), Expect = 0.45
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 61 RYIECLFGGDASLYHPVLPYK 81
R I+C F SL+HPVLPY+
Sbjct: 611 RIIKCYFLPPRSLFHPVLPYR 631
>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1400
Score = 28.3 bits (60), Expect = 1.8
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 41 EERRQILEIVGPELQSTYDDRYIECLFGGDASLYHPVLPYKIPSDIFEQMVISETAQADL 100
E++ + E+ E+Q++ D+ + G + + + + +D FEQM SE DL
Sbjct: 934 EQQLEHKEMTNHEVQTSDDEPQVNGFNGHEKDMLPQERYFSLEADKFEQMTTSEDNDLDL 993
Query: 101 --VRACYRLSSDGIYHLE 116
+ LSSD HLE
Sbjct: 994 NSIPFTEPLSSD--LHLE 1009
>SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1935
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 26 RAVKIFVASVYNDFREERRQILEIVGPELQSTYDDR 61
+ V+IF +S + D ER ++ V P LQS +R
Sbjct: 94 KIVRIFTSSTFTDTSVERNALMSRVYPRLQSFCRER 129
Score = 26.6 bits (56), Expect = 5.5
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 67 FGGDASLYHPVLPYKIPSDIFEQM--VISETAQADLVRACY 105
F G Y P LP+KI S FE++ VI+ T DLV+ Y
Sbjct: 175 FLGQKYGYRP-LPHKIDSREFEKLLSVITSTEDLDLVKYWY 214
>SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7)
Length = 839
Score = 27.1 bits (57), Expect = 4.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 34 SVYNDFREERRQILEIVGPELQSTY 58
S++N FRE+R Q+ ++G +++Y
Sbjct: 505 SIWNSFREKRNQLKAMIGKAKRNSY 529
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 14 GNTQLSDKWPGPRAVKIFVASVYNDFREERRQILEIV 50
G LSD R V+IF++S + D R +R ++E V
Sbjct: 286 GIPDLSDTRVVMRTVRIFLSSTFTDTRLDRNALMEQV 322
>SB_35561| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00092)
Length = 813
Score = 27.1 bits (57), Expect = 4.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 34 SVYNDFREERRQILEIVGPELQSTY 58
S++N FRE+R Q+ ++G +++Y
Sbjct: 479 SIWNSFREKRNQLKAMIGKAKRNSY 503
>SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)
Length = 1286
Score = 26.6 bits (56), Expect = 5.5
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 15/97 (15%)
Query: 28 VKIFVASVYNDFREERRQI--LEIVGPELQSTYDDRY-IECLFGGDASLYHPVLPYKI-- 82
+K+F V+ R QI + + L S +D + +E L G YHPV +I
Sbjct: 150 IKLFYEEVHTSLTNVRFQISGVNLEKRSLLSKWDVFFELERLLPG--GFYHPVYRSEIVA 207
Query: 83 --------PSDIFEQMVISETAQADLVRACYRLSSDG 111
P DI+ Q + +E + V +C+ SS G
Sbjct: 208 RTLDPRWSPFDIYLQKLCNEEVTREAVISCWHYSSSG 244
>SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)
Length = 1239
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 34 SVYNDFREERRQILEIVGPELQSTY 58
S++N FRE+R Q+ ++G ++ Y
Sbjct: 272 SIWNSFREKRNQLKAMIGKAKRNFY 296
>SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 100 LVRACYRLSSDGIYHLE 116
L R C++L SDG+ HL+
Sbjct: 426 LQRQCFKLESDGLIHLK 442
>SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 25.8 bits (54), Expect = 9.7
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 12 LQGNTQLSDKWPGPRAVKIFVASVYNDFREERRQILEIVGPELQSTYDDRYIECLFGGDA 71
L N ++ K GP++V + VAS+ + ++ + + ++G +T + + L
Sbjct: 47 LDSNASIN-KGKGPKSVGVEVASISTEKPDQSKSMNGMIGISELNTLECDALNVLTEKKV 105
Query: 72 SLYHPVLPYKI 82
++H VL +I
Sbjct: 106 EIFHSVLRSEI 116
>SB_35329| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 660
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 20 DKWPGP-RAVKIFVASVYNDF 39
DK P P R VKIFV SVY+ +
Sbjct: 218 DKHPPPTRYVKIFVESVYSSY 238
>SB_31418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 34 SVYNDFREERRQILEIVGPELQSTY 58
S++N FRE+R Q+ ++G ++ Y
Sbjct: 215 SIWNSFREKRNQLKAMIGKAKRNFY 239
>SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 34 SVYNDFREERRQILEIVGPELQSTY 58
S++N FRE+R Q+ ++G ++ Y
Sbjct: 494 SIWNSFREKRNQLKAMIGKAKRNFY 518
>SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 601
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 100 LVRACYRLSSDGIYHLE 116
L R C++L SDG+ HL+
Sbjct: 507 LQRQCFKLESDGLIHLK 523
>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 34 SVYNDFREERRQILEIVGPELQSTY 58
S++N FRE+R Q+ ++G ++ Y
Sbjct: 618 SIWNSFREKRNQLKAMIGKAKRNFY 642
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.138 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,323,724
Number of Sequences: 59808
Number of extensions: 154216
Number of successful extensions: 260
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 18
length of query: 121
length of database: 16,821,457
effective HSP length: 74
effective length of query: 47
effective length of database: 12,395,665
effective search space: 582596255
effective search space used: 582596255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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