Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000455-TA|BGIBMGA000455-PA|undefined
(121 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF119711-1|ABO69251.1| 3327|Homo sapiens beta-xin protein. 31 1.3
AY820969-1|AAV87913.1| 3345|Homo sapiens CMYA3 protein. 31 1.3
AL832331-1|CAD38624.1| 1946|Homo sapiens hypothetical protein pr... 31 1.3
AK096430-1|BAC04787.1| 756|Homo sapiens protein ( Homo sapiens ... 31 1.3
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin... 29 3.0
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin... 29 3.0
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin... 29 3.0
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin... 29 3.0
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin... 29 3.0
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin... 29 3.0
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein. 29 3.0
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein. 29 3.0
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p... 29 3.0
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein. 29 3.0
BC026156-1|AAH26156.2| 754|Homo sapiens leucine rich repeat con... 28 9.1
AY963267-1|AAY46032.1| 754|Homo sapiens ROR gamma binding prote... 28 9.1
AY313780-1|AAP81011.1| 633|Homo sapiens hypothetical protein FL... 28 9.1
AK001866-1|BAA91949.1| 326|Homo sapiens protein ( Homo sapiens ... 28 9.1
>EF119711-1|ABO69251.1| 3327|Homo sapiens beta-xin protein.
Length = 3327
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 8 VLQALQGNTQLSDKWPGPRAVK----IFVASVYNDFREERRQILEIVGPELQSTYDDRY 62
+++A +G T+++ + P VK +F + ++F E R + +EI+G ++ T +D Y
Sbjct: 1280 IMEAHKGITKMTKEEIPPSDVKTTTWLFETTPLHEFNETRVEKIEIIGKSIKETLEDLY 1338
>AY820969-1|AAV87913.1| 3345|Homo sapiens CMYA3 protein.
Length = 3345
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 8 VLQALQGNTQLSDKWPGPRAVK----IFVASVYNDFREERRQILEIVGPELQSTYDDRY 62
+++A +G T+++ + P VK +F + ++F E R + +EI+G ++ T +D Y
Sbjct: 1327 IMEAHKGITKMTKEEIPPSDVKTTTWLFETTPLHEFNETRVEKIEIIGKSIKETLEDLY 1385
>AL832331-1|CAD38624.1| 1946|Homo sapiens hypothetical protein
protein.
Length = 1946
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 8 VLQALQGNTQLSDKWPGPRAVK----IFVASVYNDFREERRQILEIVGPELQSTYDDRY 62
+++A +G T+++ + P VK +F + ++F E R + +EI+G ++ T +D Y
Sbjct: 889 IMEAHKGITKMTKEEIPPSDVKTTTWLFETTPLHEFNETRVEKIEIIGKSIKETLEDLY 947
>AK096430-1|BAC04787.1| 756|Homo sapiens protein ( Homo sapiens
cDNA FLJ39111 fis, clone NTONG2005265, weakly similar to
Gallus gallus Xin mRNA. ).
Length = 756
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 8 VLQALQGNTQLSDKWPGPRAVK----IFVASVYNDFREERRQILEIVGPELQSTYDDRY 62
+++A +G T+++ + P VK +F + ++F E R + +EI+G ++ T +D Y
Sbjct: 400 IMEAHKGITKMTKEEIPPSDVKTTTWLFETTPLHEFNETRVEKIEIIGKSIKETLEDLY 458
>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3174
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 85 DIFEQMVISETAQADLVRACYRLSSDGIYHLEDDDKW 121
D+F + +TA+ ++ +A Y++ +G+ ED+ W
Sbjct: 394 DVFNITIARQTAEVEVKKAGYKIYKEGVKDPEDNKGW 430
>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3095
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 85 DIFEQMVISETAQADLVRACYRLSSDGIYHLEDDDKW 121
D+F + +TA+ ++ +A Y++ +G+ ED+ W
Sbjct: 394 DVFNITIARQTAEVEVKKAGYKIYKEGVKDPEDNKGW 430
>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3174
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 85 DIFEQMVISETAQADLVRACYRLSSDGIYHLEDDDKW 121
D+F + +TA+ ++ +A Y++ +G+ ED+ W
Sbjct: 394 DVFNITIARQTAEVEVKKAGYKIYKEGVKDPEDNKGW 430
>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3095
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 85 DIFEQMVISETAQADLVRACYRLSSDGIYHLEDDDKW 121
D+F + +TA+ ++ +A Y++ +G+ ED+ W
Sbjct: 394 DVFNITIARQTAEVEVKKAGYKIYKEGVKDPEDNKGW 430
>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3174
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 85 DIFEQMVISETAQADLVRACYRLSSDGIYHLEDDDKW 121
D+F + +TA+ ++ +A Y++ +G+ ED+ W
Sbjct: 394 DVFNITIARQTAEVEVKKAGYKIYKEGVKDPEDNKGW 430
>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting
13 homolog A (S. cerevisiae) protein.
Length = 3095
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 85 DIFEQMVISETAQADLVRACYRLSSDGIYHLEDDDKW 121
D+F + +TA+ ++ +A Y++ +G+ ED+ W
Sbjct: 394 DVFNITIARQTAEVEVKKAGYKIYKEGVKDPEDNKGW 430
>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
Length = 3069
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 85 DIFEQMVISETAQADLVRACYRLSSDGIYHLEDDDKW 121
D+F + +TA+ ++ +A Y++ +G+ ED+ W
Sbjct: 394 DVFNITIARQTAEVEVKKAGYKIYKEGVKDPEDNKGW 430
>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
Length = 3135
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 85 DIFEQMVISETAQADLVRACYRLSSDGIYHLEDDDKW 121
D+F + +TA+ ++ +A Y++ +G+ ED+ W
Sbjct: 394 DVFNITIARQTAEVEVKKAGYKIYKEGVKDPEDNKGW 430
>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
protein.
Length = 3174
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 85 DIFEQMVISETAQADLVRACYRLSSDGIYHLEDDDKW 121
D+F + +TA+ ++ +A Y++ +G+ ED+ W
Sbjct: 394 DVFNITIARQTAEVEVKKAGYKIYKEGVKDPEDNKGW 430
>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
Length = 3095
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 85 DIFEQMVISETAQADLVRACYRLSSDGIYHLEDDDKW 121
D+F + +TA+ ++ +A Y++ +G+ ED+ W
Sbjct: 394 DVFNITIARQTAEVEVKKAGYKIYKEGVKDPEDNKGW 430
>BC026156-1|AAH26156.2| 754|Homo sapiens leucine rich repeat
containing 36 protein.
Length = 754
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 57 TYDDRYIECLFGGDASLYHPVLPYKIPSDI 86
T+D +CL GD+S H PY++PSD+
Sbjct: 302 THDASLSKCLDVGDSSQIH---PYQLPSDV 328
>AY963267-1|AAY46032.1| 754|Homo sapiens ROR gamma binding protein
70 protein.
Length = 754
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 57 TYDDRYIECLFGGDASLYHPVLPYKIPSDI 86
T+D +CL GD+S H PY++PSD+
Sbjct: 302 THDASLSKCLDVGDSSQIH---PYQLPSDV 328
>AY313780-1|AAP81011.1| 633|Homo sapiens hypothetical protein
FLJ11004 protein.
Length = 633
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 57 TYDDRYIECLFGGDASLYHPVLPYKIPSDI 86
T+D +CL GD+S H PY++PSD+
Sbjct: 181 THDASLSKCLDVGDSSQIH---PYQLPSDV 207
>AK001866-1|BAA91949.1| 326|Homo sapiens protein ( Homo sapiens
cDNA FLJ11004 fis, clone PLACE1002941. ).
Length = 326
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 57 TYDDRYIECLFGGDASLYHPVLPYKIPSDI 86
T+D +CL GD+S H PY++PSD+
Sbjct: 34 THDASLSKCLDVGDSSQIH---PYQLPSDV 60
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.319 0.138 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,569,122
Number of Sequences: 224733
Number of extensions: 694719
Number of successful extensions: 1238
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 18
length of query: 121
length of database: 73,234,838
effective HSP length: 81
effective length of query: 40
effective length of database: 55,031,465
effective search space: 2201258600
effective search space used: 2201258600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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