GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000455-TA|BGIBMGA000455-PA|undefined
         (121 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    36   0.008
Z68220-2|CAA92485.1|  234|Caenorhabditis elegans Hypothetical pr...    30   0.39 
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    28   2.1  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U41534-11|AAM22028.1|  686|Caenorhabditis elegans Hypothetical p...    27   3.6  
U41534-10|AAK68177.1|  687|Caenorhabditis elegans Hypothetical p...    27   3.6  
U41534-9|AAM22029.1|  690|Caenorhabditis elegans Hypothetical pr...    27   3.6  
AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical ...    27   4.8  

>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
          protein F15E6.9 protein.
          Length = 664

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 14/40 (35%), Positives = 26/40 (65%)

Query: 24 GPRAVKIFVASVYNDFREERRQILEIVGPELQSTYDDRYI 63
          G + ++I + S Y DFR ERR +L++V  +LQ    ++++
Sbjct: 25 GWKILRILLVSTYKDFRNERRAVLDLVENKLQPIASEKHV 64


>Z68220-2|CAA92485.1|  234|Caenorhabditis elegans Hypothetical
           protein T20D3.2 protein.
          Length = 234

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 77  VLPYKIPSDIFEQMVISETAQADLVRAC 104
           +LPY +P+D+ + M   ET Q   + AC
Sbjct: 20  LLPYSLPNDLIQLMAFRETPQNAAISAC 47


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
           protein T05C3.2 protein.
          Length = 1733

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 23  PGPRAVKIFVASVYNDFREERRQILEIVGPELQSTYDDRY 62
           P  + V++F +S + D   ER  ++E + P+L+    + Y
Sbjct: 96  PQSKLVRVFTSSTFTDTTVERNALMEEIYPKLKEYCRETY 135


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
           protein F32H2.5 protein.
          Length = 2586

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/38 (26%), Positives = 23/38 (60%)

Query: 44  RQILEIVGPELQSTYDDRYIECLFGGDASLYHPVLPYK 81
           ++ +E +  E++S  DD Y++ L    A++   +LP++
Sbjct: 439 QEAVENIFTEIESNKDDLYLQALLANQANMPANLLPFR 476


>U41534-11|AAM22028.1|  686|Caenorhabditis elegans Hypothetical
           protein C16A3.1b protein.
          Length = 686

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 33  ASVYNDFREERRQILEIVGPELQSTYDD 60
           A V  D  E+RR+++ + GP + +  DD
Sbjct: 411 ADVLKDLPEKRREVVYVSGPTIDARMDD 438


>U41534-10|AAK68177.1|  687|Caenorhabditis elegans Hypothetical
           protein C16A3.1a protein.
          Length = 687

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 33  ASVYNDFREERRQILEIVGPELQSTYDD 60
           A V  D  E+RR+++ + GP + +  DD
Sbjct: 412 ADVLKDLPEKRREVVYVSGPTIDARMDD 439


>U41534-9|AAM22029.1|  690|Caenorhabditis elegans Hypothetical
           protein C16A3.1c protein.
          Length = 690

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 33  ASVYNDFREERRQILEIVGPELQSTYDD 60
           A V  D  E+RR+++ + GP + +  DD
Sbjct: 415 ADVLKDLPEKRREVVYVSGPTIDARMDD 442


>AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical
           protein C34B2.8 protein.
          Length = 171

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 18  LSDKWPGPRAVKIFVAS-VYNDFREER-RQILEIVGPELQSTYDDRYIECLF 67
           L DKW  P A ++FV S   N+ R+   RQ  E  GP+    +  +++   F
Sbjct: 119 LGDKWWDPTATEVFVHSRGSNETRDHLWRQHSEYAGPKFYDNWFPQWMSKWF 170


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,891
Number of Sequences: 27539
Number of extensions: 120356
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 8
length of query: 121
length of database: 12,573,161
effective HSP length: 73
effective length of query: 48
effective length of database: 10,562,814
effective search space: 507015072
effective search space used: 507015072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)