Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000454-TA|BGIBMGA000454-PA|IPR001478|PDZ/DHR/GLGF,
IPR000008|C2 calcium-dependent membrane targeting, IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein, IPR008973|C2
calcium/lipid-binding region, CaLB
         (1292 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    29   0.21 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    29   0.27 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     29   0.27 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    26   1.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    26   1.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   4.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   4.4  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 29.1 bits (62), Expect = 0.21
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 999  TLDALGVCLPDDREGNARLMASIVECLPRAARATLVFLLDHLALVVAAQDRNKM---SPQ 1055
            TL  +GV LP        L A+    L     A +   L+  A+  AAQ  +++   SP 
Sbjct: 117  TLSPVGVALPPT------LPAAAAAALLPPQTAAMAAYLNAAAVAAAAQQSHRLMMTSPS 170

Query: 1056 HLAVALAPPLMLH-SSPPGELDYQRPIH 1082
                A   PL+   SSPPG      P+H
Sbjct: 171  GFNRASVSPLISSSSSPPGVFPVDAPMH 198



 Score = 26.6 bits (56), Expect = 1.1
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 9/109 (8%)

Query: 278 PDSAALDLYYNPRPPSDHSTWSYRP--------PPPVITEQPKSSATHFVPYERSYPNTL 329
           P +  LDL  + R  S+  + S  P         P V+ + P       +PY  +     
Sbjct: 237 PGNGPLDLSVSSRKRSNDDSVSQPPNRKPRTDFKPQVLPQWPSPIGASHLPYFAAAVAAA 296

Query: 330 DSLAEKVHSYYPPESGSTRFGGRVPRSGSEQQLPRAETHSDFGRHSLLR 378
            +L+ K +S     +G  + GG  P S + + L +    S  G   L R
Sbjct: 297 SNLSPKTNSSPDLWNGKLKHGGPTP-SDATKALEKMSELSKLGGEDLFR 344


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 302 PPPPVITEQPK-SSATHFVPYERSYPNTLDSLAEKVHSYYPPESGSTRFG 350
           PP PV T +P+ +  T   P + S   T  S  +K  +   PESG+   G
Sbjct: 392 PPEPVPTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKTPESGNESDG 441


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 785 LYCVLECDRVHKARTVIRNSELDFDWDEAFDLELVDNRQLDVLVYSWDPQHRHKLCYRGV 844
           L C +E    +   +VI     DF+  E   L      + D +V +  PQ  + + +RG+
Sbjct: 290 LNCPIEVSIDNHTLSVISTDGSDFNATEVDSLVTYAGERFDFIVTADQPQDVYWMHFRGL 349

Query: 845 ITLPDLVARSAMHQLAIKLEPRGT 868
           +   +   R+  +Q+A+ LE +GT
Sbjct: 350 MDCDERFTRA--YQVAV-LEYKGT 370


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 683 ELGSRFTCPNPSPVPTPG--SRHQRPLD 708
           E+   FTCP P  V   G  SRH  P D
Sbjct: 150 EVAGGFTCPAPGEVSNSGSFSRHAHPDD 177


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 683 ELGSRFTCPNPSPVPTPG--SRHQRPLD 708
           E+   FTCP P  V   G  SRH  P D
Sbjct: 150 EVAGGFTCPAPGEVSNSGSFSRHAHPDD 177


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 277 SPDSAALDLYYNPRPPSDHSTWSYR-PPPPVITEQPKSSATHFVPYERSYPNTLDSL 332
           SP  +    Y    P + H  +  + PPPP    QP  +     P++ + P +++ L
Sbjct: 710 SPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPVGTNPHDINNPLSVNQL 766


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 277 SPDSAALDLYYNPRPPSDHSTWSYR-PPPPVITEQPKSSATHFVPYERSYPNTLDSL 332
           SP  +    Y    P + H  +  + PPPP    QP  +     P++ + P +++ L
Sbjct: 602 SPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPVGTNPHDINNPLSVNQL 658


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,494
Number of Sequences: 317
Number of extensions: 9678
Number of successful extensions: 29
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 8
length of query: 1292
length of database: 114,650
effective HSP length: 65
effective length of query: 1227
effective length of database: 94,045
effective search space: 115393215
effective search space used: 115393215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)