Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000454-TA|BGIBMGA000454-PA|IPR001478|PDZ/DHR/GLGF,
IPR000008|C2 calcium-dependent membrane targeting, IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein, IPR008973|C2
calcium/lipid-binding region, CaLB
(1292 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 73 3e-13
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 67 2e-11
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 62 4e-10
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 62 6e-10
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 36 0.037
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 36 0.037
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 31 1.0
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 29 3.2
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 29 3.2
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 29 4.2
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 29 5.6
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 29 5.6
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 72.9 bits (171), Expect = 3e-13
Identities = 61/208 (29%), Positives = 98/208 (47%), Gaps = 18/208 (8%)
Query: 885 RPTQGRVSPPP-------LFGSELEAVVAREIRPPNAPPVPLXXXXXXXXXXXXGLDIIG 937
RPT VSP P LFG+ L+A++ RE N P + + GL++ G
Sbjct: 487 RPTS--VSPQPSSPTKSLLFGARLDAIILRE--HSNIPNIVMQCTSQVENF---GLNLQG 539
Query: 938 LYRLCGAASKKRVLREGFERNARTVELTPEAVP-DINVITGVLKDYLRELPQPLFSRCLF 996
+YR+ ++++ +LR FE N TPE D++ + +LK + REL +PL
Sbjct: 540 IYRVPSSSARVNMLRSQFENNPLLQLHTPEDYENDVHAVADLLKIFFRELREPLIPDNHQ 599
Query: 997 QMTLDALGVCLPDDREGNARLMASIVECLPRAARATLVFLLDHLALVVAAQDRNKMSPQH 1056
+ +DA V +D + + LP A +T+ L HLA + D NKMS +
Sbjct: 600 RDFIDAGNV---EDESRRRDAVHRAINDLPDANYSTIRHLTIHLAKIKENSDVNKMSTNN 656
Query: 1057 LAVALAPPLMLHSSPPGELDYQRPIHVL 1084
LA+ P ++ ++ P + R I +L
Sbjct: 657 LAIIWGPTIIKQATIPEISSFSRTIEIL 684
>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 66.9 bits (156), Expect = 2e-11
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 13/187 (6%)
Query: 880 ELFRRRPTQGRVSPPPLFGSELEAVVAREIRPPNAPPVPLXXXXXXXXXXXXGLDIIGLY 939
E+ R P G P +FG LE + E +P GL++ G+Y
Sbjct: 763 EMPTRMPPPG--PSPTMFGRSLENQLKIE-----GSVLPQVIAMCVSCVDAHGLEVEGIY 815
Query: 940 RLCGAASKKRVLREGFERNARTVELTPEAVPDINVITGVLKDYLRELPQPLFSRCLFQMT 999
R+ G+AS+ RVL + FE + +E D+ T VLK YL LP+P+ ++
Sbjct: 816 RISGSASQVRVLVDEFENGSIRME---HLTSDLFACTSVLKTYLHRLPEPVIPGTQYEEL 872
Query: 1000 LDALGVCLPDDREGNARLMASIVECLPRAARATLVFLLDHLALVVAAQDRNKMSPQHLAV 1059
L+A + + E + +++ L A + FL+ HL V ++N M+ ++++
Sbjct: 873 LEAEKI---EKEEEKIERVVEVMKTLHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKNVST 929
Query: 1060 ALAPPLM 1066
AP LM
Sbjct: 930 VFAPTLM 936
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 62.5 bits (145), Expect = 4e-10
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 932 GLDIIGLYRLCGAASKKRVLREGFERNARTVELTPEAVPDINVITGVLKDYLRELPQPLF 991
G+D GLYR GA S+ + + RN TV L P DI+ +T V K YLR LP P+
Sbjct: 775 GMDFEGLYRKSGATSQMKKI-VALLRNEDTV-LDPSE--DISAVTSVFKQYLRNLPNPII 830
Query: 992 SRCLFQMTLDALGVCLPDDREGNARLMASIVECLPRAARATLVFLLDHLALVVAAQDRNK 1051
+ + + A D+ +++ LP A L ++ HLA V A N+
Sbjct: 831 TYDQYFPFITAANCASFQDKLDG---FIMVIKSLPPAHAEILQLIIRHLARVAAYSHANR 887
Query: 1052 MSPQHLAVALAPPLM 1066
M+ ++LAV +P L+
Sbjct: 888 MTSKNLAVVFSPTLI 902
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 492 RRNRSLDYSSDTEATAPTRPPYYSG---LSGYRSSTLGRDITSKFN-SLPRDVRNT 543
RR+ +++Y S + T+P++ Y SG LS RD+T+K N +PR+ RN+
Sbjct: 324 RRSSTMNYKSVSTTTSPSKYGYVSGRIALSPIHLRGALRDVTNKCNLKVPRN-RNS 378
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 61.7 bits (143), Expect = 6e-10
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 937 GLYRLCGAASKKRVLREGFERNARTVELTPEAVPDINVITGVLKDYLRELPQPLFSRCLF 996
G+YRL G+AS + L+E F L+ + D++VI G+LK YLR LP L +
Sbjct: 1103 GIYRLSGSASTIKHLKEQFNEGVDYDLLSSDEEFDVHVIAGLLKLYLRNLPTNLLDTSMH 1162
Query: 997 QMTLDALGVCLPDDREGNARLMASIVECLPRAARATLVFLLDHLALVVAAQDRNKMSPQH 1056
+ L L +P+D L ++ LP A L LL HL ++A + NKM+ ++
Sbjct: 1163 K--LFELLPNVPNDSAALGEL-CDVISKLPPENFALLDSLLHHLRRIIAFEKVNKMNIRN 1219
Query: 1057 LAVALAPPLMLHS 1069
+ + +P L + S
Sbjct: 1220 VCIVFSPTLNIPS 1232
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 35.9 bits (79), Expect = 0.037
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 951 LREGFERNAR-TVELTPEAVPDINVITGVLKDYLRELPQPLFSRCLFQMTLDALGVCLPD 1009
LRE ++ T E+ + P +V+ GVLK Y ELP + F++ + ++ + +
Sbjct: 507 LREALNHSSSVTKEVLSQYTP--SVVIGVLKLYFLELPDSIVPSSAFEL-IRSIYMNHSN 563
Query: 1010 DREGNARLMASIVECLPRAARATLVFLLDHLALVVAAQDRNKMSPQHLAVALA 1062
D RL+ +++ L R ATL ++ HL ++ + +LA +L+
Sbjct: 564 DTPYRLRLLQNLLSQLRRVNLATLSAIITHLNRLITLTPNKETFTINLANSLS 616
>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1150
Score = 35.9 bits (79), Expect = 0.037
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 11/143 (7%)
Query: 933 LDIIGLYRLCGAASKKRVLREGFERNARTVELTPEAVPDINVITGVLKDYLRELPQPLFS 992
+ ++G++R G + + L + + + +++ E + +LK +LRELP PL +
Sbjct: 877 MSVVGVFRKNGNIRRLKELSDMLDVSPDSIDYEQETPIQL---AALLKKFLRELPDPLLT 933
Query: 993 RCLFQMTLDALGVCLPDDREGNARLMASIVECLPRAARATLVFLLDHLALVVA---AQDR 1049
LF + + + + + E R++ + LP+ R T+ + L V + D
Sbjct: 934 FKLFGLFITSSKL---ESEEERMRVLHLTICLLPKGHRDTMEVIFGFLYWVASFSHIDDE 990
Query: 1050 --NKMSPQHLAVALAPPLMLHSS 1070
+KM +LA + P ++ S
Sbjct: 991 VGSKMDIHNLATVITPNILYSKS 1013
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 296 STWSYRPPPPVITEQPKSSATHFVPYERSYPNTLDSLAEKVHSYYPPESGSTRFGGRVPR 355
++W Y PPPP T + S+A + D++A Y P S R G + R
Sbjct: 456 ASWHYVPPPPESTVEIVSNAPTLAMEDVQPTAASDTMALAPQEVYKP-SNENREGETITR 514
Query: 356 SG 357
SG
Sbjct: 515 SG 516
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 298 WSYRPPPPVITEQPKSSATHFVPYERSYP 326
W Y P P++T S+A + VP++ YP
Sbjct: 375 WGYAFPAPLLTPYEASAAFNVVPWKEVYP 403
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 279 DSAALDLYYNPRPP-SDHSTWSYRPPPPVITEQPKSSATHFVPYERS---YPNT 328
DSA+ L N PP S H S+ PP P + P ++ T VP + YP+T
Sbjct: 31 DSASPRLTPNLPPPFSVHQLQSFVPPQPPSSSSPSTTGTVAVPINGANAVYPST 84
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 264 GREERSRLQL--GALSPDSAALDLYYNPRPPSDHSTWSYRPPPPVITEQPKSSATHFVPY 321
G RS Q+ L P++ L++ + S W Y P I E K H V
Sbjct: 31 GSSSRSTPQITGSPLDPNTPVKRLFFMRINIAQFSRWDYPYPREYIEELKKIHGVHHVEE 90
Query: 322 ERSYPNTLDSLAEKVHSYYPPESGSTRF 349
R P+ L++ + S +T +
Sbjct: 91 NRDVPSILENYRNSKRKSHNFSSSNTPY 118
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 101 FALQDTRHVVQLVEIVKRPGQTLGLYIREGDGGTRTDGVFISRIALESAVYNSGCLKVGD 160
FA + V+ + V +PG+ + L + E GG T I RI L NSG + + D
Sbjct: 591 FAYDPRKPVLSDINFVAQPGKVIAL-VGESGGGKST----IMRILLRFFDVNSGSITIDD 645
Query: 161 -EILAVNLVDVR 171
+I V L +R
Sbjct: 646 QDIRNVTLSSLR 657
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 161 EILAVNLVDVRRMSLDDVVIIMSIPRRLLLCTR 193
+ILA+++ D R L+D+ + ++ RLL CTR
Sbjct: 161 KILAIDINDPRAKLLNDISDVQNLMPRLLPCTR 193
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,657,997
Number of Sequences: 5004
Number of extensions: 172220
Number of successful extensions: 429
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 16
length of query: 1292
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1211
effective length of database: 1,957,154
effective search space: 2370113494
effective search space used: 2370113494
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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