GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000454-TA|BGIBMGA000454-PA|IPR001478|PDZ/DHR/GLGF,
IPR000008|C2 calcium-dependent membrane targeting, IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein, IPR008973|C2
calcium/lipid-binding region, CaLB
         (1292 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   3.0  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    25   3.0  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    24   7.0  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 967 EAVPDINVITGVLKDYLRELPQPLFSRCL 995
           EA  D +++ G+L D L+E  Q +  +CL
Sbjct: 87  EANVDEDIMLGLLPDQLQERAQSVMGKCL 115


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 967 EAVPDINVITGVLKDYLRELPQPLFSRCL 995
           EA  D +++ G+L D L+E  Q +  +CL
Sbjct: 87  EANVDEDIMLGLLPDQLQERAQSVMGKCL 115


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 796 KARTVIRNSELDFDWDEAFDLELVDNRQL 824
           K  +  +N+E+ F   E F+ E VD R++
Sbjct: 53  KTTSPFKNTEIKFKLGEEFEEETVDGRKV 81


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,603
Number of Sequences: 429
Number of extensions: 13111
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 5
length of query: 1292
length of database: 140,377
effective HSP length: 66
effective length of query: 1226
effective length of database: 112,063
effective search space: 137389238
effective search space used: 137389238
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)