Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000453-TA|BGIBMGA000453-PA|undefined
(80 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 0.55
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 25 1.7
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 24 2.2
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 24 2.9
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S... 23 3.8
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 23 3.8
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 23 6.7
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 22 8.9
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 22 8.9
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 22 8.9
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 22 8.9
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 0.55
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 49 HYCDCWC----KPGLIRDSIAHKCVKECPK 74
HY CWC KP +++ + H C C K
Sbjct: 256 HYL-CWCGKQEKPEFVKNLVPHSCGDPCGK 284
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 24.6 bits (51), Expect = 1.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 16 ISSAECPPDQYDPGPN 31
I SAEC ++ PGPN
Sbjct: 337 IDSAECDAEEPSPGPN 352
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 24.2 bits (50), Expect = 2.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 26 YDPGPNCAFETICALRSAHSNRKH 49
Y GP+ F T C ++ H+ ++H
Sbjct: 46 YFYGPSIDFPTTCKIKQVHTLQRH 69
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 2.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 24 DQYDPGPNCAFETICALRSAHSNRKH 49
+ Y GP +F CA++ H ++H
Sbjct: 44 EPYFNGPTTSFPESCAIKQVHLLQRH 69
>SPAC105.02c |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 170
Score = 23.4 bits (48), Expect = 3.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 61 RDSIAHKCVKECPKYDEI 78
RDS+ + CV C KY +
Sbjct: 43 RDSLGNDCVHVCTKYGSL 60
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 23.4 bits (48), Expect = 3.8
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 10 IISCLGISSAECPPDQYDPGPNCAFETICALRSAHSNRKHY 50
I +G+ A PD D A + I R HS+ K Y
Sbjct: 257 IAKLIGLVEAYFSPDTVDDEFTLAIDAINGSRLKHSHYKQY 297
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 22.6 bits (46), Expect = 6.7
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 48 KHYCD---CWCKPGLIRDSIAHKCVKECPKYD 76
KH+ D C +PG+ + +C ++CP D
Sbjct: 3 KHHPDLVLCRRQPGITVGKLCERCDEKCPICD 34
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 22.2 bits (45), Expect = 8.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 12 SCLGISSAECPPDQYDPGPNCAFETI 37
S + S+ + PP PGPN A + +
Sbjct: 117 SSVNSSTEKLPPPPSYPGPNTAHKNV 142
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 22.2 bits (45), Expect = 8.9
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 33 AFETICALRSAHSNRKHYCDCWCKPG 58
A T+ +L + YCD KPG
Sbjct: 986 AIRTVASLNREENVFAEYCDSLIKPG 1011
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 22.2 bits (45), Expect = 8.9
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 22 PPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKP 57
P D + N + L S +N H CD KP
Sbjct: 283 PADNFGSNDNHSHNKKRRLSSLSTNNNHLCDNCHKP 318
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 22.2 bits (45), Expect = 8.9
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 12 SCLGISSAECPPDQYDPGPNCAFETICALRS 42
S LGI +C Q P F TI AL S
Sbjct: 1319 SMLGIEILKCIIHQGLVNPRMCFSTIIALES 1349
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.327 0.142 0.516
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,893
Number of Sequences: 5004
Number of extensions: 14261
Number of successful extensions: 29
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 11
length of query: 80
length of database: 2,362,478
effective HSP length: 59
effective length of query: 21
effective length of database: 2,067,242
effective search space: 43412082
effective search space used: 43412082
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)
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