GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000453-TA|BGIBMGA000453-PA|undefined
         (80 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247           29   0.62 
10_02_0060 - 4808506-4808535,4808564-4809588,4810125-4810292,481...    28   1.1  
12_02_0023 - 12404617-12405285                                         26   3.3  
03_06_0461 - 34107506-34107845,34107993-34108151,34108564-341087...    25   5.8  
02_05_0750 - 31479876-31480985                                         25   5.8  
02_04_0413 + 22681957-22682035,22682253-22682788                       25   5.8  
02_04_0238 + 21186072-21186883,21187315-21189346                       25   5.8  
09_02_0404 - 8592872-8593231,8593735-8594004,8595551-8595964,859...    25   7.7  
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    25   7.7  
03_05_0154 - 21302056-21302418,21302920-21303198,21304745-213051...    25   7.7  

>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
          Length = 722

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 38  CALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKECPKYDEIL 79
           C+      NR    DC CKPG+  D  A  C ++ P   +++
Sbjct: 347 CSSDGICKNRPGGYDCPCKPGMKGDGKAGTCTEKFPLVAKVI 388


>10_02_0060 -
           4808506-4808535,4808564-4809588,4810125-4810292,
           4811202-4811652
          Length = 557

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 31  NCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKECP 73
           NC+F ++C       NR    DC CK G+  D     C +  P
Sbjct: 163 NCSFNSVCV------NRPGGFDCPCKRGMTGDGKRGTCTENFP 199


>12_02_0023 - 12404617-12405285
          Length = 222

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 13  CLGISSAECPPDQYDPGPNCAFETICALRSAHSN 46
           C GI+S+   P  +     CAF TI A R  H++
Sbjct: 86  CAGITSSAIAPPLFCSSDACAF-TITAFRDLHAS 118


>03_06_0461 -
           34107506-34107845,34107993-34108151,34108564-34108763,
           34109042-34109213,34111127-34111350,34111438-34111644
          Length = 433

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 2/17 (11%)

Query: 45  SNRKHYCDC--WCKPGL 59
           +N K Y DC  WC PGL
Sbjct: 402 ANPKSYADCTHWCLPGL 418


>02_05_0750 - 31479876-31480985
          Length = 369

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 20  ECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIR 61
           E  P    P P+   + +  L S    RK Y DCW    +++
Sbjct: 203 EPEPQLPPPPPDSDRKVVLYLTSLRGIRKTYEDCWATKSILQ 244


>02_04_0413 + 22681957-22682035,22682253-22682788
          Length = 204

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 3/23 (13%)

Query: 13  CLGISSAECPPDQYDPGPNCAFE 35
           C G S  ECPP    P P C  E
Sbjct: 148 CCGCSGGECPP---PPSPPCQHE 167


>02_04_0238 + 21186072-21186883,21187315-21189346
          Length = 947

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 52  DCWCKP-GLIRDSIAHKCVKECPKY 75
           D WC P  L++  +A+KC+   P +
Sbjct: 744 DLWCPPPSLLQKFVANKCLSVIPNW 768


>09_02_0404 -
           8592872-8593231,8593735-8594004,8595551-8595964,
           8596249-8596398
          Length = 397

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 26  YDPGPNCAFETICALRSAHSNRKHYCDCWCKPGL 59
           Y   P+C  E +  LRSA  N   Y     K GL
Sbjct: 207 YSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGL 240


>07_03_1503 +
          27017933-27018063,27019668-27019727,27019996-27020101,
          27020254-27020325,27021008-27021061,27021707-27021856,
          27022206-27022547,27022651-27024684,27024706-27024947,
          27025658-27026235,27026329-27028183,27028533-27028851,
          27028980-27029417
          Length = 2126

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 22 PPDQYDPGPNCAFETI 37
          PPD Y   PNC  ET+
Sbjct: 67 PPDYYPQTPNCPEETL 82


>03_05_0154 -
           21302056-21302418,21302920-21303198,21304745-21305158,
           21305443-21305592
          Length = 401

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 26  YDPGPNCAFETICALRSAHSNRKHYCDCWCKPGL 59
           Y   P+C  E +  LRSA  N   Y     K GL
Sbjct: 207 YSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGL 240


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.142    0.516 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,540
Number of Sequences: 37544
Number of extensions: 100327
Number of successful extensions: 254
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 12
length of query: 80
length of database: 14,793,348
effective HSP length: 59
effective length of query: 21
effective length of database: 12,578,252
effective search space: 264143292
effective search space used: 264143292
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)