GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000453-TA|BGIBMGA000453-PA|undefined
         (80 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       31   0.098
SB_12383| Best HMM Match : EGF_CA (HMM E-Value=2.5e-12)                30   0.23 
SB_23241| Best HMM Match : EGF_CA (HMM E-Value=6.3e-30)                30   0.30 
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)                 29   0.69 
SB_56410| Best HMM Match : CXCXC (HMM E-Value=0.014)                   28   0.91 
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   1.6  
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)              27   2.1  
SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)                   27   2.8  
SB_28793| Best HMM Match : Furin-like (HMM E-Value=2.6)                27   2.8  
SB_53660| Best HMM Match : COLFI (HMM E-Value=1.5)                     27   2.8  
SB_16815| Best HMM Match : TIL (HMM E-Value=0.39)                      27   2.8  
SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)                       26   3.7  
SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)                      26   3.7  
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30)          26   4.9  
SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_12833| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 25   6.4  
SB_32260| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  
SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)                25   8.5  
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)             25   8.5  

>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 31.5 bits (68), Expect = 0.098
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 15  GISSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDC 53
           G    ECP   Y  G NC++   CA     S R   CDC
Sbjct: 264 GYCKEECPRGIY--GRNCSYTCQCAYNQTCSKRDGLCDC 300


>SB_12383| Best HMM Match : EGF_CA (HMM E-Value=2.5e-12)
          Length = 228

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 32  CAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKEC 72
           C     C + +  +N     +C CKPGL+ D +  KC  +C
Sbjct: 136 CDTSNPCHVNATCTNTVGSYECSCKPGLVGDGL--KCADDC 174


>SB_23241| Best HMM Match : EGF_CA (HMM E-Value=6.3e-30)
          Length = 200

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 11  ISCLGISSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCD-------CWCKPGLIRDS 63
           ++ +G  +  C P     G NCA    C+LRS + ++   C        C CK G   D 
Sbjct: 136 VNTIGSFACTCKPGYTGDGINCADIDECSLRSDNCHQDAICSNTAASFTCTCKQGFKGDG 195

Query: 64  IA 65
           ++
Sbjct: 196 VS 197


>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
          Length = 419

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 1   MNLWFVLLFIISCLGISSAECPPDQYDPGPNCAFETICALRSAHSNRKHYC 51
           + ++ VL F ISC G+S ++ PP +     +C F   C    +H   +  C
Sbjct: 113 IKMFLVLFFRISC-GVSGSQDPPQE-----SCPFRVSCGALGSHVPPQESC 157


>SB_56410| Best HMM Match : CXCXC (HMM E-Value=0.014)
          Length = 272

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 35  ETICALRSAHSN--RKHY----CDCWCKPGLIRDSIAHKCVKECPKYD 76
           E  C ++S H +  R++Y    C C CK       + +KC KE P Y+
Sbjct: 207 EEACRIKSHHCDPIRQYYDERTCSCKCKANYTYFKLGYKCGKE-PDYE 253


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 15   GISSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCW-CKPGLIRDSIAHKCVKECP 73
            G+  +EC   +Y  G  C     C +           DC  C PG +     H CV ECP
Sbjct: 947  GVCESECSKGRYKSGDACK---PCHVSCNACRGPAKGDCLRCNPGHVY--FKHTCVTECP 1001

Query: 74   K 74
            +
Sbjct: 1002 E 1002


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 49   HYCDCWCKPGLIRDSIAHKCVKECPK 74
            H C+  C PG   D + ++C K CPK
Sbjct: 1766 HVCEKVCHPG-DPDHVEYECRKPCPK 1790


>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
          Length = 498

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 25 QYDPGPNCAFETIC-ALRSAHSNRKHYCDCWCK 56
          Q+D   N A +T+  A +  +SNR H  DC CK
Sbjct: 32 QWDKKENDADKTVRDAQKQQYSNRGHLIDCNCK 64


>SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)
          Length = 451

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 40  LRSAHSNRKHYCDCW 54
           +R  H N  HYCD W
Sbjct: 366 MREKHGNIAHYCDLW 380


>SB_28793| Best HMM Match : Furin-like (HMM E-Value=2.6)
          Length = 300

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 28  PGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHK----------CVKECPK 74
           P   C      +  S   + + +CD  C+PG  + SI  K          CVKECPK
Sbjct: 165 PQKVCHVTNCLSCESVSYHGRRHCDT-CRPGYHKHSIHAKFGFGMIYDDVCVKECPK 220


>SB_53660| Best HMM Match : COLFI (HMM E-Value=1.5)
          Length = 471

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 11  ISCLGISSAECPPDQYDPG---PNCAFETICALRSAHSNRKHYCD 52
           I C+G   A C PD Y  G    +C     C +  A  N  + CD
Sbjct: 412 IGCIGDRQATCFPDDYALGVGVSSCKDGYGCTVVGASRNMHYRCD 456


>SB_16815| Best HMM Match : TIL (HMM E-Value=0.39)
          Length = 225

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 12  SCLGISSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKE 71
           S   I S+     Q       +   IC  RSA +   HY D WC+    +    H   + 
Sbjct: 118 SVTSIQSSSAKTTQVSSSVTTSDAVICKARSAFA---HYGDLWCQQQCDQPGAEHCLFEN 174

Query: 72  C 72
           C
Sbjct: 175 C 175


>SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1050

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 14  LGISSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCD-------CWCKPGLIRDSIAH 66
           LG +   CP  +   G +CA    CA   A +N    C+       C C+PG I  +   
Sbjct: 397 LGYTCGACPSGRTGDGVSCADINECA-DPADNNCPQECENTLGGYKCKCRPGYISSNNGR 455

Query: 67  KC 68
            C
Sbjct: 456 IC 457


>SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 868

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 14  LGISSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCD-------CWCKPGLIRDSIAH 66
           LG +   CP  +   G +CA    CA   A +N    C+       C C+PG I  +   
Sbjct: 223 LGYTCGACPSGRTGDGVSCADINECA-DPADNNCPQECENTLGGYKCKCRPGYISSNNGR 281

Query: 67  KC 68
            C
Sbjct: 282 IC 283


>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 40  LRSAHSNRKHYCDCWCKPGLIR 61
           L+ +H ++K Y DCW K  + +
Sbjct: 733 LKLSHQSQKSYYDCWVKEKIFK 754


>SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30)
          Length = 351

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 32  CAFETICALRSAHSNRKHYCDCWCKPGLIRDSI 64
           C     C + +  +N     +C CKPGL+ D +
Sbjct: 159 CDTSNPCHVNATCTNTVGSYECSCKPGLVGDGL 191


>SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 7/70 (10%)

Query: 9   FIISCLGISSAECPPDQYDPGPNCAFETICALRSAHSNRKHYCD-------CWCKPGLIR 61
           F  + +G     C P   +    C     C       +   YCD       C+CK G + 
Sbjct: 415 FCFNTIGSYMCLCKPGFINNENACLDRNECLEEENDCDDNAYCDNTSGSYECYCKEGYVG 474

Query: 62  DSIAHKCVKE 71
           D     CV++
Sbjct: 475 DGSIGNCVRK 484


>SB_12833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 8/50 (16%)

Query: 39  ALRSAHSNRKHYCDCWC---KPGLIRD-----SIAHKCVKECPKYDEILD 80
           A+++A S+ +HY  C C   + G I+D     S+A+K   EC +   + D
Sbjct: 415 AIQTALSDPRHYLKCECCEIEAGAIQDSLPDVSVAYKLHLECSRMINLYD 464


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)

Query: 66   HKCVKECPKYDEILD 80
            H+C+  CP++D ++D
Sbjct: 1566 HRCIGYCPQFDALID 1580


>SB_32260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)

Query: 66 HKCVKECPKYDEILD 80
          H+C+  CP++D ++D
Sbjct: 10 HRCIGYCPQFDALID 24


>SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 21  CPPDQYDPGPNCAFETICALRSAHSNRKHYCD---CWCKPGLIR 61
           CPP +Y   P  A E  C      +  +H+     C+C+    R
Sbjct: 141 CPPGRYARNPGTATELDCQPCQDGTKYRHFAGFRACFCRENYYR 184


>SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)
          Length = 996

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 51  CDCWCKPGLIRDSIAHKCVKECPKYD 76
           C C    GL++ S +H C K  P Y+
Sbjct: 504 CRCASDVGLLQASFSHLCEKLLPWYE 529


>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
          Length = 1215

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 15   GISSAECPPDQYDPGPNCAFETIC 38
            G+S  +CPP  Y+P      E  C
Sbjct: 1089 GVSQPQCPPGTYNPQTKLRKEQDC 1112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.142    0.516 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,375,272
Number of Sequences: 59808
Number of extensions: 119187
Number of successful extensions: 390
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 31
length of query: 80
length of database: 16,821,457
effective HSP length: 58
effective length of query: 22
effective length of database: 13,352,593
effective search space: 293757046
effective search space used: 293757046
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)