GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000453-TA|BGIBMGA000453-PA|undefined
         (80 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59400.2 68418.m07444 expressed protein predicted protein, Ar...    26   2.7  
At5g59400.1 68418.m07443 expressed protein predicted protein, Ar...    26   2.7  
At2g45220.1 68415.m05630 pectinesterase family protein contains ...    25   6.3  
At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo sapi...    25   8.3  
At2g22000.1 68415.m02613 expressed protein                             25   8.3  

>At5g59400.2 68418.m07444 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 301

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 30  PNCAFETICALRSAHSNRK-HYCDC 53
           PNC  E    +RS  SNR  H  DC
Sbjct: 231 PNCGEEVFAFVRSDQSNRSAHKADC 255


>At5g59400.1 68418.m07443 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 299

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 30  PNCAFETICALRSAHSNRK-HYCDC 53
           PNC  E    +RS  SNR  H  DC
Sbjct: 231 PNCGEEVFAFVRSDQSNRSAHKADC 255


>At2g45220.1 68415.m05630 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 511

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 32  CAFETICALRSAHSNRKHYCDC 53
           C+FE        HSNR+ Y DC
Sbjct: 323 CSFEAYQDTLYVHSNRQFYRDC 344


>At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo
          sapiens, PID:d1034112
          Length = 434

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 11 ISCLGISSAECPPDQYDPGPNCAFET 36
          +SCL IS A  PP  ++  PN   +T
Sbjct: 44 LSCLPISQAREPPPIFNLDPNSVKDT 69


>At2g22000.1 68415.m02613 expressed protein 
          Length = 104

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 10 IISCLGISSAECPPDQYDPGPNCAFE 35
          I+ CLG+ S+  PP      P+   E
Sbjct: 40 ILKCLGLESSSIPPSSSSSSPSLVEE 65


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.142    0.516 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,065
Number of Sequences: 28952
Number of extensions: 79903
Number of successful extensions: 208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 7
length of query: 80
length of database: 12,070,560
effective HSP length: 59
effective length of query: 21
effective length of database: 10,362,392
effective search space: 217610232
effective search space used: 217610232
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)