Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000452-TA|BGIBMGA000452-PA|IPR000990|Innexin
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.11 |atp18||F0 ATPase subunit J |Schizosaccharomyces pom...    27   3.4  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     27   4.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   4.5  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    27   4.5  

>SPAC23C4.11 |atp18||F0 ATPase subunit J |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 60

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 199 LDTFLGGAFLTYGTDVVRFSNMNQ-EQRTDP 228
           L  FLGGA + YGT  +R + M+  E R DP
Sbjct: 18  LPFFLGGAIVFYGTVKLRDAMMDSAEYRNDP 48


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 130 WK-NWEEGKVRLISEGMRGTMASIADDKNNRQNRLVQYLLDTLHMHNTYSFGYFFCEVLN 188
           WK +   G + L+++     M  +  + NN++N  V  L D +     Y F   F   + 
Sbjct: 187 WKRSLRSGLIELLNQSFEVRM--LTHENNNKKNSYVFRLFDRVSSSTFYFFNSLFAYFII 244

Query: 189 FANVVGNIFFL 199
              ++  +  L
Sbjct: 245 LLRIINEVILL 255


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 115 MLFFQGLLFYIPHWIWKNWE-----EGKVRLISEGMRGTMASIADDKNNR--QNRLVQYL 167
           +L+ +  +     W+ K W        + + +S+ MR T  +I DD N+R  +++  +++
Sbjct: 665 LLWNENAIMGTKRWLTKIWNCVHQLLEREKKMSDAMRQTKLTIVDDHNSRKLESQYNEFI 724

Query: 168 LD-TLHMHNTYSFGYFFCEVLNFANVVGN 195
              + H  N +S      + +   N + +
Sbjct: 725 SQCSAHYENVFSLNLVISDAMKLTNNIAD 753


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 352 RRLNLGSHAPSAPSTLEMAP--IYPDIDKYS 380
           R +N  SHA   PS L M P  I P+I+K S
Sbjct: 196 RPVNFASHAKQCPSFLAMDPNNIPPEINKVS 226


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.140    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,828
Number of Sequences: 5004
Number of extensions: 72186
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 4
length of query: 385
length of database: 2,362,478
effective HSP length: 74
effective length of query: 311
effective length of database: 1,992,182
effective search space: 619568602
effective search space used: 619568602
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)