GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000452-TA|BGIBMGA000452-PA|IPR000990|Innexin
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1347 - 29492460-29494685                                         32   0.89 
08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007           31   1.2  
01_01_0421 + 3181139-3184207                                           29   6.3  
05_01_0170 + 1180168-1180367,1181538-1181598,1181657-1181659,118...    29   8.3  
02_02_0587 + 11875678-11877234,11877606-11877608,11877755-118778...    29   8.3  

>06_03_1347 - 29492460-29494685
          Length = 741

 Score = 31.9 bits (69), Expect = 0.89
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 164 VQYLLDTLHMHNTYSFGYFFCEVLNFANVVGNIFFLDTFLGGAFLTYGTDVVRF 217
           VQ LLD L      S G+F+   ++  N V N+F+ D     A+ ++G D V F
Sbjct: 271 VQDLLDYLRKMQAESPGFFYAMQVDSGNCVTNVFWADAKARMAYKSFG-DAVTF 323


>08_01_0363 - 3176409-3177270,3182349-3182947,3183657-3184007
          Length = 603

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 93  HPGLGDDNDEKRIHSYYQWVPFMLFFQGLLFYIPHWIWKNWEEGKVRLISEG 144
           HP L DD ++ ++H +Y W+   +    LL Y+    W  ++ G+     +G
Sbjct: 541 HPWLADDLNKGQLHKFY-WLLAGVCLANLLVYLVAARWYKYKAGRAAAAGDG 591


>01_01_0421 + 3181139-3184207
          Length = 1022

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 125 IPHWIWKNWEEGK 137
           IPHW W+NW++ +
Sbjct: 556 IPHWAWENWKDAQ 568


>05_01_0170 +
           1180168-1180367,1181538-1181598,1181657-1181659,
           1182396-1182443,1182979-1184595
          Length = 642

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%)

Query: 99  DNDEKRIHSYYQW-VPFMLFFQGLLFYIPHWIWKNWEEGKVRLISEGMRGTMASIADDKN 157
           D D++R+     + +  +LFF   LF++  +IW  +EE KV   SEG  G  +  AD KN
Sbjct: 32  DKDQERLLLASSFCIASLLFFLHSLFHVSLFIW--FEESKVS--SEGF-GKGSHYADFKN 86

Query: 158 NRQ 160
            ++
Sbjct: 87  QQE 89


>02_02_0587 +
           11875678-11877234,11877606-11877608,11877755-11877823,
           11878605-11878719,11879139-11879248
          Length = 617

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 329 LLLHLLGQNMSLRVFGEVLDELSRRLNLGSHAPSAPSTLEMAPIYPDID 377
           LLLH L +  S+ V       +S    L S +PS P+TL    I+PD D
Sbjct: 6   LLLHHLRRRYSVSVSSAEDMVVSSLRILSSASPSEPTTLPPPTIHPDPD 54


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.140    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,844,880
Number of Sequences: 37544
Number of extensions: 441945
Number of successful extensions: 1086
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 5
length of query: 385
length of database: 14,793,348
effective HSP length: 83
effective length of query: 302
effective length of database: 11,677,196
effective search space: 3526513192
effective search space used: 3526513192
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)