GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000452-TA|BGIBMGA000452-PA|IPR000990|Innexin
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49954| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_37422| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.7  
SB_25569| Best HMM Match : DUF600 (HMM E-Value=1.3)                    30   3.7  
SB_7186| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_34014| Best HMM Match : MFS_1 (HMM E-Value=0.18)                    29   6.4  
SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   8.4  
SB_2719| Best HMM Match : CUB (HMM E-Value=1.9e-24)                    29   8.4  

>SB_49954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 128 WIWKNWEEGKVRLISEGMRGTMASIADDKNNR 159
           WIW +W++ K  L +EG R ++ +   ++ +R
Sbjct: 66  WIWASWQDTKESLKTEGTRRSLKAALKERGHR 97


>SB_37422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 185 EVLN-FANVVGNIFFLDTFLGGAFLTYGTDVVRFSNMNQEQRTDPMI 230
           E+LN F N+ G   +L        L YG D+     + Q+Q+TDP I
Sbjct: 6   ELLNKFENIAGVQLYLHDKYQRVLLQYGRDLETCRKIYQKQKTDPPI 52


>SB_25569| Best HMM Match : DUF600 (HMM E-Value=1.3)
          Length = 271

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 185 EVLN-FANVVGNIFFLDTFLGGAFLTYGTDVVRFSNMNQEQRTDPMI 230
           E+LN F N+ G   +L        L YG D+     + Q+Q+TDP I
Sbjct: 150 ELLNKFENIAGVQLYLHDKYQRVLLQYGRDLETCRKIYQKQKTDPPI 196


>SB_7186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 325 VGDFLLLHLLGQNMS----LRVFGEVLDELSRRLNLGSHAPSAPSTLEMAPIYPDIDKYS 380
           +G   +L   GQN+S    +  F   +D L + +     AP+AP TL+  P Y D D + 
Sbjct: 294 IGGIRVLGTSGQNVSDISKVTTFDNSMDILEQNMVCSHLAPTAPDTLDCYP-YADQDPFI 352

Query: 381 KE 382
            E
Sbjct: 353 LE 354


>SB_34014| Best HMM Match : MFS_1 (HMM E-Value=0.18)
          Length = 195

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 5   GLVSSVAGFVKVRYLIDKAVIDNMVFRMHYRITSAILFLCCILV 48
           G+V++ A    +   + +A+ID + +R  YRI  A+  + CILV
Sbjct: 151 GIVAAGASIGTLIGPVYQALIDGVGWRNSYRIIGALFSIACILV 194


>SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 729

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 75  CWITYTFTMPNTTSKTAAHPGLGDDNDEKRIH 106
           C +T+TF++   TS+     GL DD D    H
Sbjct: 629 CLMTFTFSIITCTSRFQRRGGLDDDPDTSHTH 660


>SB_2719| Best HMM Match : CUB (HMM E-Value=1.9e-24)
          Length = 614

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 333 LLGQNMSLRVFGEVLDELSRRLNLGSHAPSAPSTLEMAPIYPDIDKY 379
           L+G    L+  GE L++  R +   + A  AP   E    +PD++++
Sbjct: 531 LVGMLEQLQKEGEELEKAEREMEKDAEAAEAPKQAESPENFPDLEEF 577


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.140    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,402,383
Number of Sequences: 59808
Number of extensions: 486860
Number of successful extensions: 1363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1359
Number of HSP's gapped (non-prelim): 7
length of query: 385
length of database: 16,821,457
effective HSP length: 83
effective length of query: 302
effective length of database: 11,857,393
effective search space: 3580932686
effective search space used: 3580932686
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)