GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000452-TA|BGIBMGA000452-PA|IPR000990|Innexin
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21820.1 68417.m03156 calmodulin-binding family protein conta...    31   1.7  
At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR ...    29   6.9  
At4g25920.1 68417.m03727 expressed protein contains Pfam profile...    28   9.1  
At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1) (...    28   9.1  

>At4g21820.1 68417.m03156 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 1088

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 103 KRIHSYYQWVPFMLFFQGLLF-YIPHWIWKNW---EEGKVRLISEGMR-GTMASIADDKN 157
           +R++  Y++   ++ FQ   + YI    W+ +   +  K +++   +R  T A+  DDK 
Sbjct: 831 RRMNRTYKFSSILIQFQVSFYPYISQSHWRGYLTRKASKAQVLDLRVRMQTSAANIDDKK 890

Query: 158 NRQNRLVQYLLDTLHMHNTYSFGYFFCEVLNFA 190
              N+L+  L + L M N ++     CE L  A
Sbjct: 891 RLINKLLSALSELLSMKNVHNI-LHICETLESA 922


>At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 44  CCILVTANNLIGEPIAC---ISDGANPGHVINTF 74
           CC L  A N+IGE ++C   I +  N  HV+N++
Sbjct: 344 CCGLPLALNVIGETMSCKRTIQEWRNAIHVLNSY 377


>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 390

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 60  CISDGANPGHVINTFCWITYTFTMPNTTSKTAAHPGLGDDNDEKRIHSYYQWVP 113
           C+   ++PG   N   ++ Y F + + T+KT       DDN  +++   Y W P
Sbjct: 328 CVPASSSPGLKPNCIYFVGYNFGVYDLTTKTCTMFLTKDDNPLRKLEFPY-WPP 380


>At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1)
           (CHL1) identical to nitrate/chlorate transporter
           SP:Q05085 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00854 POT family
          Length = 590

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 92  AHPGLGDDNDEKRIHSYYQWVPFMLFFQGLLFYIPHWIWKNWEEGKV 138
           AHP + DD ++ R++++Y W+  +L     L ++    W  ++E ++
Sbjct: 528 AHPWIADDLNKGRLYNFY-WLVAVLVALNFLIFLVFSKWYVYKEKRL 573


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.140    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,921,227
Number of Sequences: 28952
Number of extensions: 366199
Number of successful extensions: 846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 5
length of query: 385
length of database: 12,070,560
effective HSP length: 82
effective length of query: 303
effective length of database: 9,696,496
effective search space: 2938038288
effective search space used: 2938038288
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)