Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000451-TA|BGIBMGA000451-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
         (120 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    29   0.26 
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    28   0.46 
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    27   0.81 
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    26   1.9  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   4.3  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   4.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   4.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    24   7.5  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    24   7.5  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   9.9  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    23   9.9  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    23   9.9  

>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 28.7 bits (61), Expect = 0.26
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 95  PTSHNPYHHHHLAQLNS 111
           P  + PYHHHH A LN+
Sbjct: 21  PLGNAPYHHHHHAGLNA 37


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.9 bits (59), Expect = 0.46
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 74  HPAAAHMSHWYGAPHQGFAPPPTSHNPYHHHHLAQLN-SMTGWRSE 118
           HP AA + +  G P     PP   H+  H H  A ++ S+T   SE
Sbjct: 256 HPRAASIGNKSGIPPVPTIPPNIGHSTDHQHPKANISGSLTKSSSE 301


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 0.81
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 49  DATKGFGGSAFPSAMDFGQHQVGLVHPAAAHMSHWYGAPH 88
           +A      + F   M F    +G VH  A  +  +YG PH
Sbjct: 281 EARDNMAYAEFLGGMAFNNASLGYVHAMAHQLGGFYGIPH 320


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 91  FAPPPTSHNPYHHHHLAQLNSMTGW 115
           F  P T  + +HH H  +L S+ GW
Sbjct: 4   FQLPKTLKSLWHHPHNGELISINGW 28


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 98  HNPYHHHH 105
           H PYHHHH
Sbjct: 6   HLPYHHHH 13


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 83  WYGAPHQGFAPPPTSHNPYHHHHLAQLNSMTGWRSE 118
           W G P     P P+S++ +H+  + +L S  G+RSE
Sbjct: 28  WNGFPGSSNRPLPSSNDEFHYEDI-ELPS--GYRSE 60


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 100 PYHHHHLAQLNSMTGW 115
           PYHHHH   + +   W
Sbjct: 62  PYHHHHTFTIEAFFYW 77


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 59  FPSAMDFGQHQVG--LVHPAAAHMSH--WYGAPHQGFAPPPTSHNPYHH 103
           FP+  + G+H     + H    HM     +  P +   PPP  H P  H
Sbjct: 197 FPAHHEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEH 245


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 46  PLGDATKGFGGSAFPSAMDFGQHQVGLVHPAAAHMSHWYGAPHQGFA 92
           P+ +    FG S+F SA        G+  P ++ ++   G P+  F+
Sbjct: 238 PVQNNPSSFGSSSFGSATSGPSAFGGISQPNSSFVNSGQGIPNSSFS 284


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 56  GSAFPSAMDFGQHQVGLVHPAAAHMSHWYGAPHQGFAPPPTSHNPYHHHHLAQLNSMT 113
           G++  +A     H  G V+ + +H S+ +  P    +PP  S  PY       +NS+T
Sbjct: 471 GASRATAAVVADHASGPVNGSYSHNSYSHIPPVMSTSPPNHSVYPYSQ---LSINSVT 525


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 58  AFPSAMDFGQHQVGLVHPAAAHMSHWYGAPHQGFAPPPT--SHNPYH 102
           A+ + M      +GL  P   H+SH +  P +  +   T  S  PY+
Sbjct: 119 AYQAVMKPHDRLMGLDLPHGGHLSHGFSTPQKAISAVSTYFSTMPYN 165


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 87  PHQGFAPPPTSHNPYHH 103
           P+Q  A PP S+NP  H
Sbjct: 101 PNQTTAMPPPSNNPSRH 117


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 461,673
Number of Sequences: 5004
Number of extensions: 15765
Number of successful extensions: 48
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 21
length of query: 120
length of database: 2,362,478
effective HSP length: 65
effective length of query: 55
effective length of database: 2,037,218
effective search space: 112046990
effective search space used: 112046990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)