Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000451-TA|BGIBMGA000451-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
(120 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7) 35 0.015
SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.14
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 29 1.0
SB_7617| Best HMM Match : Sod_Fe_N (HMM E-Value=2) 29 1.0
SB_17078| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 27 3.1
SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41) 27 5.4
SB_40209| Best HMM Match : Ank (HMM E-Value=0) 26 7.2
SB_30346| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 26 7.2
SB_12845| Best HMM Match : Collagen (HMM E-Value=6.2) 26 9.5
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 590
Score = 35.1 bits (77), Expect = 0.015
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 68 HQVGLVHPAAAHMSHWYGAPHQGFAPPPTSHNPYHHHHLAQLNSMT 113
H G P ++ HW H P +H+P+H HH +S+T
Sbjct: 526 HPTGQSSPTSSSSPHWSVITHIIIITPLVNHHPHHRHHPTGQSSLT 571
Score = 32.3 bits (70), Expect = 0.11
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 68 HQVGLVHPAAAHMSHWYGAPHQGFAPPPTSHNPYHHHH 105
H G P+++ HW H P +H+ +HHHH
Sbjct: 427 HPSGQSSPSSSSSPHWSIITHIIIITPLVNHHSHHHHH 464
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 72 LVHPAAAHMSHWYG--APHQGFAPPPTSHNPYHHHH 105
LV+ + H H G +P +P +H+P+HHHH
Sbjct: 454 LVNHHSHHHHHPTGQSSPSSSSSPLFVNHHPHHHHH 489
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 68 HQVGLVHPAAAHMSHWYGAPHQGFAPPPTSHNPYHHHHLAQLNSMTGWRSEY 119
H G + ++ HW H +H+ YHHHH +S T S +
Sbjct: 489 HPTGQLLLTSSSSPHWSIITHIIIITTLVNHHSYHHHHPTGQSSPTSSSSPH 540
>SB_48169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 31.9 bits (69), Expect = 0.14
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 43 MIKPLGDAT-KGFGGSAFPSAMDFGQHQV-GLVHPAAAHMSHWYGAPHQGFAPPPTSHNP 100
+ + +G T KG+ + A G H G HP A H + Y QG +H P
Sbjct: 125 LARAMGTHTPKGYSHTQRVLAHPMGTHTPNGYSHPTATHTPNGYSHTQQGLTRQTGTHTP 184
Query: 101 YHHHHLAQ-LNSMTGWRS 117
+ H + L TG R+
Sbjct: 185 NGYSHAQRVLTHQTGTRT 202
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 72 LVHPAAAHMSHWYGAPHQGFAPPPTSHNPYHHHHLAQL 109
L HP A + Y Q P +H P + H Q+
Sbjct: 87 LTHPTATETPNGYSHTQQVLTHPTATHTPNGYSHTKQV 124
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 74 HPAAAHMSHWYGAPHQGFAPPPTSHNPYHHHHLAQL 109
H H H+ H P H PYHHH QL
Sbjct: 924 HHHHQHHGHYRRRRHYHHPYYPYYHQPYHHHQYHQL 959
>SB_7617| Best HMM Match : Sod_Fe_N (HMM E-Value=2)
Length = 211
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 67 QHQVGLVHPAAAHMSHWYGAPHQGFAPPPTSHNPYHHHHLAQLNSMT 113
+H+ G VH AA + + QG T H +HH H ++ T
Sbjct: 19 EHRDGRVHYAAKFVQSTFPHLPQGMTHARTMHQHHHHQHDSKTEDKT 65
>SB_17078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 28.3 bits (60), Expect = 1.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 92 APPPTSHNPYHHHHL 106
+PPP+S+N +HHH +
Sbjct: 219 SPPPSSNNHHHHHQI 233
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 79 HMSHWYGAPHQGFAPPPTSHNPYHHH 104
H H+ P+Q PPP + PYH H
Sbjct: 145 HHHHFVQPPYQ--VPPPPTPQPYHPH 168
>SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 67 QHQVGLVHPAAAHMSHWYGAPHQGFAPPPTSHNPY---HHHHLAQLNSMTGWRSEYT 120
Q+ + + AH+ Y H ++P H+PY H + Q +S T S YT
Sbjct: 16 QYSTAHIQYSTAHIQ--YSTAHTQYSPYTVQHSPYTVQHSPYTVQHSSYTVQHSPYT 70
>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
Length = 131
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 82 HWYGAPHQGFAPP--PTSHNPYHHHH 105
H+Y HQ PP P+ H+ HH H
Sbjct: 7 HYYHRHHQHHHPPSSPSYHHHRHHQH 32
>SB_40209| Best HMM Match : Ank (HMM E-Value=0)
Length = 885
Score = 26.2 bits (55), Expect = 7.2
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 98 HNPYHHHH 105
H+PYHHHH
Sbjct: 759 HHPYHHHH 766
>SB_30346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 81 SHWYGAPHQGFAPPPTSHNPY 101
S+ AP + PPP SH PY
Sbjct: 12 SYTISAPPEPQTPPPLSHQPY 32
>SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 926
Score = 26.2 bits (55), Expect = 7.2
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 66 GQHQV--GLVHPAAAHMSHWYGAPHQGFAPPPTSHNPYHHHHLAQLNSMTGWRSEY 119
G HQ+ L P + H YG+PH+ P P PY + + M W Y
Sbjct: 846 GPHQMRKSLSFPRDPGVLH-YGSPHRQRPPYPVQQPPYPVNGMPGAMPMPPWIPPY 900
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 26.2 bits (55), Expect = 7.2
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 46 PLGDATKGFGGSAFPSAMDFGQHQVGLVHPAAAHMSHWYGAPHQGFAPPPTSHNP 100
P GDA + G+ FP G +V + + SH +P Q PPP P
Sbjct: 158 PTGDALRQSIGTTFPPTRLPGNARVNAIDQISIGTSH-PTSPSQITQPPPPPPRP 211
>SB_12845| Best HMM Match : Collagen (HMM E-Value=6.2)
Length = 183
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 50 ATKGFGGSAFPSAMDFG 66
+TKGFGG AF ++ FG
Sbjct: 83 STKGFGGLAFAASTGFG 99
>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2179
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 93 PPPTSHNPYHHHHLAQL 109
PPP H+ +HHHHL L
Sbjct: 961 PPP--HHHHHHHHLDAL 975
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.133 0.443
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,509,962
Number of Sequences: 59808
Number of extensions: 125006
Number of successful extensions: 486
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 47
length of query: 120
length of database: 16,821,457
effective HSP length: 74
effective length of query: 46
effective length of database: 12,395,665
effective search space: 570200590
effective search space used: 570200590
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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