GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000451-TA|BGIBMGA000451-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
         (120 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.044
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.24 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   6.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   8.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   8.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   8.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 0.044
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 11/41 (26%)

Query: 74  HPAAAHMSHWYGAPHQGFAPP---------PTSHNPYHHHH 105
           HP   H S ++  PH+G +P          PT   P+HHHH
Sbjct: 317 HPHQHHPSQYH--PHRGSSPHHQHGNHTMGPTMGPPHHHHH 355


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.24
 Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 1/33 (3%)

Query: 74  HPAAAHMSHWYGAPHQGF-APPPTSHNPYHHHH 105
           H A  H  H     H  + A     H P+HH H
Sbjct: 436 HAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPH 468


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 77  AAHMSHWYGAPHQGFAPPPTSHNPYHHHHL 106
           + H+      P     P   SH+  HHH +
Sbjct: 52  STHLMDLSSPPEHRDLPIYQSHHHLHHHQV 81


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 79  HMSHWYGAPHQGFAPPPTSHNPYHHHH 105
           ++  ++G P    A  PTS NP  + +
Sbjct: 258 YVKRFFGLPVGVTAAIPTSENPADYRY 284


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 79  HMSHWYGAPHQGFAPPPTSHNPYHHHH 105
           ++  ++G P    A  PTS NP  + +
Sbjct: 258 YVKRFFGLPVGVTAAIPTSENPADYRY 284


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 79  HMSHWYGAPHQGFAPPPTSHNPYHHHH 105
           ++  ++G P    A  PTS NP  + +
Sbjct: 258 YVKRFFGLPVGVTAAIPTSENPADYRY 284


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,618
Number of Sequences: 429
Number of extensions: 981
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 120
length of database: 140,377
effective HSP length: 51
effective length of query: 69
effective length of database: 118,498
effective search space:  8176362
effective search space used:  8176362
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)