Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000450-TA|BGIBMGA000450-PA|IPR000679|Zinc finger,
GATA-type
         (67 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)                    60   2e-10
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)                  48   1e-06
SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095)                  32   0.075
SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)               29   0.53 
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         28   1.2  
SB_56362| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                27   2.1  
SB_53919| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                27   2.1  
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        27   2.1  
SB_31343| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                27   2.1  
SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)               27   2.8  
SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)                27   2.8  
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                26   4.9  
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)             25   6.5  
SB_20928| Best HMM Match : NHL (HMM E-Value=0)                         25   6.5  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
          Length = 563

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 24/45 (53%), Positives = 29/45 (64%)

Query: 6   GRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPK 50
           G  C NC  T T LWRR+  G  +CNACGLY+K++  NRPL   K
Sbjct: 409 GTSCANCHTTQTTLWRRNQNGDPVCNACGLYWKLHAVNRPLSMKK 453


>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
          Length = 297

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 7   RECVNCGATSTPLWRRDGTGHYLCNACGLYYK 38
           +EC +CG   TPLWR    G  LCNACG+ YK
Sbjct: 221 KECASCGVAKTPLWRDAEDGTPLCNACGIRYK 252


>SB_36369| Best HMM Match : GATA (HMM E-Value=0.00095)
          Length = 225

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 1  MYAAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNR 44
          M   +  +C  C    + +WR+   G  LCN C L  ++N   R
Sbjct: 1  MPLGQNAQCFACKINESLMWRKGANGEILCNCCHL-KRVNASTR 43


>SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)
          Length = 443

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 11  NCGATSTPLWRRDGTGHYLCNA 32
           NC    +P  R D TGHY CNA
Sbjct: 186 NCNVACSP--RNDSTGHYNCNA 205


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)

Query: 11   NCGATSTPLWRRDGTGHYLCN 31
            NC A  TP  R D TGH+ CN
Sbjct: 1106 NCTAYCTP--RNDSTGHFSCN 1124


>SB_56362| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 468

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 2   YAAEGRECVNCGATSTPLWRRDGTGHYLCNA 32
           + +E R C NCG T     + +G G Y C A
Sbjct: 105 FFSENRLCFNCGRTGHRENKCNGRGCYKCKA 135


>SB_53919| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 289

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 2   YAAEGRECVNCGATSTPLWRRDGTGHYLCNA 32
           + +E R C NCG T     + +G G Y C A
Sbjct: 168 FFSENRLCFNCGRTGHRENKCNGRGCYKCKA 198


>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 2   YAAEGRECVNCGATSTPLWRRDGTGHYLCNA 32
           + +E R C NCG T     + +G G Y C A
Sbjct: 330 FFSENRLCFNCGRTGHRENKCNGRGCYKCKA 360


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 5/35 (14%)

Query: 9   CVNCGAT-STPL----WRRDGTGHYLCNACGLYYK 38
           C+ C  T ST L     + D   HY C+ CG  YK
Sbjct: 303 CIQCQVTFSTELEYTVHKNDCNSHYSCDECGKVYK 337


>SB_31343| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 449

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 2   YAAEGRECVNCGATSTPLWRRDGTGHYLCNA 32
           + +E R C NCG T     + +G G Y C A
Sbjct: 105 FFSENRLCFNCGRTGHRENKCNGRGCYKCKA 135


>SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 3   AAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMN 40
           + +G++C+  G  +   W ++  G    N  G +Y  N
Sbjct: 259 SVQGKKCIRLGIQTRRAWPKESKGDLCFNGTGEHYNGN 296


>SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 5/35 (14%)

Query: 9   CVNCGAT-STPL----WRRDGTGHYLCNACGLYYK 38
           C+ C  T ST L     + D   HY C+ CG  YK
Sbjct: 235 CIQCQVTFSTELEYTVHKNDCNSHYSCDECGKVYK 269


>SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
          Length = 147

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 17 TPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHSE 56
          T L    G   Y CN CG Y++ +      +K  +R+HSE
Sbjct: 50 THLIIHSGQKPYQCNECGKYFRYSRS----MKSHQRIHSE 85



 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 28 YLCNACGLYYKMNGQNRPLIKPKRRLHSE 56
          Y CN CG Y++ +      +K  +R+HSE
Sbjct: 5  YQCNECGKYFRYSRS----MKSHQRIHSE 29


>SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
          Length = 147

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 17 TPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHSE 56
          T L    G   Y CN CG Y++ +      +K  +R+HSE
Sbjct: 50 THLIIHSGQKPYQCNECGKYFRYSRS----MKSHQRIHSE 85



 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 28 YLCNACGLYYKMNGQNRPLIKPKRRLHSE 56
          Y CN CG Y++ +      +K  +R+HSE
Sbjct: 5  YQCNECGKYFRYSRS----MKSHQRIHSE 29


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 8   ECVNCGATSTPLWRRDGTGHYLCN---ACGLYYKMNGQNR 44
           EC+ CGA +  L  RDG     C    A G+ Y +N  +R
Sbjct: 628 ECLRCGANTVSLPTRDGCTTNNCTFSPAEGVEYDLNELSR 667


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 28  YLCNACGLYYKMNGQNRPLIKPKRRLHSE 56
           Y+C+ CG  YK +G  R   +     HS+
Sbjct: 227 YVCSTCGKQYKQSGHMRRHERSHEHGHSD 255


>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
          Length = 1382

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 45  PLIKPKRRLHSETTSARMGVVYS 67
           P++ PK+R HS T++A   +V S
Sbjct: 655 PIVTPKQRHHSSTSNATSPIVPS 677


>SB_20928| Best HMM Match : NHL (HMM E-Value=0)
          Length = 795

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 7   RECVNCGATSTPLWRRDGTGHYLCNAC 33
           REC NCG  S           +LC++C
Sbjct: 109 RECSNCGEGSMVTAHCKDCNEFLCDSC 135


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 19  LWRRDGTGHYLCNACG 34
           L R D  GHY CNA G
Sbjct: 546 LSRNDSLGHYSCNANG 561


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.134    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,989
Number of Sequences: 59808
Number of extensions: 90695
Number of successful extensions: 199
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 42
length of query: 67
length of database: 16,821,457
effective HSP length: 46
effective length of query: 21
effective length of database: 14,070,289
effective search space: 295476069
effective search space used: 295476069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)