Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000450-TA|BGIBMGA000450-PA|IPR000679|Zinc finger,
GATA-type
(67 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1) id... 46 3e-06
At4g36620.1 68417.m05197 zinc finger (GATA type) family protein 46 4e-06
At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ... 46 4e-06
At2g18380.1 68415.m02141 zinc finger (GATA type) family protein 44 2e-05
At5g25830.1 68418.m03065 zinc finger (GATA type) family protein ... 43 3e-05
At4g32890.1 68417.m04680 zinc finger (GATA type) family protein ... 42 4e-05
At5g66320.2 68418.m08362 zinc finger (GATA type) family protein 42 5e-05
At5g66320.1 68418.m08361 zinc finger (GATA type) family protein 42 5e-05
At3g51080.1 68416.m05593 zinc finger (GATA type) family protein ... 42 5e-05
At3g54810.2 68416.m06066 zinc finger (GATA type) family protein ... 42 7e-05
At3g54810.1 68416.m06065 zinc finger (GATA type) family protein ... 42 7e-05
At3g45170.1 68416.m04875 zinc finger (GATA type) family protein ... 42 7e-05
At4g34680.1 68417.m04923 GATA transcription factor 3, putative (... 41 1e-04
At3g60530.1 68416.m06770 zinc finger (GATA type) family protein ... 40 2e-04
At3g16870.1 68416.m02157 zinc finger (GATA type) family protein ... 40 2e-04
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ... 40 2e-04
At5g26930.1 68418.m03211 zinc finger (GATA type) family protein ... 40 2e-04
At1g08010.1 68414.m00874 zinc finger (GATA type) family protein ... 40 2e-04
At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZI... 39 4e-04
At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZI... 39 4e-04
At3g20750.1 68416.m02625 zinc finger (GATA type) family protein 39 4e-04
At5g49300.1 68418.m06101 zinc finger (GATA type) family protein ... 39 5e-04
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 39 5e-04
At3g06740.1 68416.m00799 zinc finger (GATA type) family protein 39 5e-04
At4g36240.1 68417.m05155 zinc finger (GATA type) family protein ... 38 6e-04
At2g45050.1 68415.m05608 zinc finger (GATA type) family protein ... 38 6e-04
At5g56860.1 68418.m07095 zinc finger (GATA type) family protein ... 38 8e-04
At1g08000.2 68414.m00873 zinc finger (GATA type) family protein ... 38 8e-04
At1g08000.1 68414.m00872 zinc finger (GATA type) family protein ... 38 8e-04
At4g26150.1 68417.m03764 zinc finger (GATA type) family protein ... 38 0.001
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ... 38 0.001
At3g21175.2 68416.m02676 zinc finger (GATA type) family protein ... 36 0.003
At3g21175.1 68416.m02675 zinc finger (GATA type) family protein ... 36 0.003
At1g51600.2 68414.m05811 zinc finger (GATA type) family protein ... 35 0.006
At1g51600.1 68414.m05810 zinc finger (GATA type) family protein ... 35 0.006
At5g48200.1 68418.m05954 hypothetical protein 27 1.2
At3g59130.1 68416.m06592 DC1 domain-containing protein contains ... 27 1.2
At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar ... 27 2.0
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 26 3.6
At4g34140.1 68417.m04845 D111/G-patch domain-containing protein ... 25 4.7
At4g09690.1 68417.m01592 DC1 domain-containing protein contains ... 25 6.2
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ... 25 8.2
At5g24680.1 68418.m02917 expressed protein similar to unknown pr... 25 8.2
>At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1)
identical to GATA transcription factor 1 (AtGATA-1)
GB:Y13648 [Arabidopsis thaliana]
Length = 274
Score = 46.0 bits (104), Expect = 3e-06
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 6 GRECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
GR+C +CGA TP WR G LCNACG+ YK +G+ P +P
Sbjct: 193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYK-SGRLVPEYRP 236
>At4g36620.1 68417.m05197 zinc finger (GATA type) family protein
Length = 211
Score = 45.6 bits (103), Expect = 4e-06
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYK 38
R C NC TSTPLWR G LCNACG+ +K
Sbjct: 75 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFK 107
>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 295
Score = 45.6 bits (103), Expect = 4e-06
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYK 38
R C NC TSTPLWR G LCNACG+ +K
Sbjct: 152 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFK 184
>At2g18380.1 68415.m02141 zinc finger (GATA type) family protein
Length = 207
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYK 38
R C +C TSTPLWR G LCNACG+ +K
Sbjct: 91 RRCASCDTTSTPLWRNGPKGPKSLCNACGIRFK 123
>At5g25830.1 68418.m03065 zinc finger (GATA type) family protein
GATA transcription factor, Arabidopsis thaliana,
PIR:T05288
Length = 331
Score = 42.7 bits (96), Expect = 3e-05
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 4 AEGRECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
AE R C++C TP WR G LCNACG+ YK +G+ P +P
Sbjct: 216 AEERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYK-SGRLVPEYRP 261
>At4g32890.1 68417.m04680 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
gb:Y13650
Length = 308
Score = 42.3 bits (95), Expect = 4e-05
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 6 GRECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
GR C++C TP WR G LCNACG+ YK +G+ P +P
Sbjct: 196 GRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYK-SGRLVPEYRP 239
>At5g66320.2 68418.m08362 zinc finger (GATA type) family protein
Length = 339
Score = 41.9 bits (94), Expect = 5e-05
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R+C +CG TP WR G LCNACG+ YK +G+ P +P
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYK-SGRLLPEYRP 291
>At5g66320.1 68418.m08361 zinc finger (GATA type) family protein
Length = 339
Score = 41.9 bits (94), Expect = 5e-05
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R+C +CG TP WR G LCNACG+ YK +G+ P +P
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYK-SGRLLPEYRP 291
>At3g51080.1 68416.m05593 zinc finger (GATA type) family protein
GATA transcription factor 3 - Arabidopsis thaliana,
PIR:T05288
Length = 312
Score = 41.9 bits (94), Expect = 5e-05
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R+C +CG TP WR G LCNACG+ YK +G+ P +P
Sbjct: 221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYK-SGRLLPEYRP 263
>At3g54810.2 68416.m06066 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 41.5 bits (93), Expect = 7e-05
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R+C++C T TP WR G LCNACG+ YK +G+ P +P
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYK-SGRLFPEYRP 271
>At3g54810.1 68416.m06065 zinc finger (GATA type) family protein
GATA transcription factor 3, Arabidopsis thaliana,
Y13650
Length = 322
Score = 41.5 bits (93), Expect = 7e-05
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R+C++C T TP WR G LCNACG+ YK +G+ P +P
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYK-SGRLFPEYRP 271
>At3g45170.1 68416.m04875 zinc finger (GATA type) family protein
contains GATA-type zinc finger domain,
INTERPRO:IPR000679
Length = 204
Score = 41.5 bits (93), Expect = 7e-05
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
+ C +CG TPLWR G LCNACG+ Y+ G+ P +P
Sbjct: 115 KSCSHCGTRKTPLWREGPRGAGTLCNACGMRYR-TGRLLPEYRP 157
>At4g34680.1 68417.m04923 GATA transcription factor 3, putative
(GATA-3) identical to GATA-binding transcription factor
GATA-3 [Arabidopsis thaliana] gi|2959734|emb|CAA74001;
identical to cDNA for GATA transcription factor 3
GI:2959733
Length = 269
Score = 40.7 bits (91), Expect = 1e-04
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R C +CG +TP WR G LCNACG+ +K +G+ P +P
Sbjct: 180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFK-SGRLCPEYRP 222
>At3g60530.1 68416.m06770 zinc finger (GATA type) family protein
identical to cDNA for GATA transcription factor 4
GI:2959735
Length = 240
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 4 AEG-RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
A+G R C +C + TP WR G LCNACG+ YK +G+ P +P
Sbjct: 154 ADGARRCTHCASEKTPQWRTGPLGPKTLCNACGVRYK-SGRLVPEYRP 200
>At3g16870.1 68416.m02157 zinc finger (GATA type) family protein
contains Pfam profile:PF00320 GATA:GATA zinc finger
Length = 190
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGL 35
R CV+CG TPLWR G LCNACG+
Sbjct: 42 RTCVDCGTIRTPLWRGGPAGPKSLCNACGI 71
>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
contains Pfam:PF00320 GATA zinc finger domain
Length = 470
Score = 39.9 bits (89), Expect = 2e-04
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 9 CVNCGATSTPLWRRDGTGH-YLCNACGLYYKMNG 41
C +CG TSTPLWR LCNACG ++ G
Sbjct: 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKG 40
>At5g26930.1 68418.m03211 zinc finger (GATA type) family protein
various predicted proteins, Arabidopsis thaliana
Length = 120
Score = 39.9 bits (89), Expect = 2e-04
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKPKRRLHSETTSARMGVV 65
R C C T TP+WR TG LCNACG+ ++ ++ L R H S ++ ++
Sbjct: 26 RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIHIIRSHKSLASKKINLL 85
Query: 66 YS 67
S
Sbjct: 86 SS 87
>At1g08010.1 68414.m00874 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 303
Score = 39.9 bits (89), Expect = 2e-04
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R+C +C T TP WR +G LCNACG+ ++ +G+ P +P
Sbjct: 220 RKCTHCETTKTPQWREGPSGPKTLCNACGVRFR-SGRLVPEYRP 262
>At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZIM)
identical to zinc-finger protein expressed in
Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
thaliana]
Length = 309
Score = 39.1 bits (87), Expect = 4e-04
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 9 CVNCGATS--TPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIK 48
C +CG +S TP+ RR +G LCNACGL++ G R L K
Sbjct: 214 CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSK 256
>At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZIM)
identical to zinc-finger protein expressed in
Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
thaliana]
Length = 309
Score = 39.1 bits (87), Expect = 4e-04
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 9 CVNCGATS--TPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIK 48
C +CG +S TP+ RR +G LCNACGL++ G R L K
Sbjct: 214 CTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSK 256
>At3g20750.1 68416.m02625 zinc finger (GATA type) family protein
Length = 208
Score = 39.1 bits (87), Expect = 4e-04
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 10 VNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNR 44
+NC A +TP+WRR G LCNACG+ ++ + +
Sbjct: 162 MNCNALNTPMWRRGPLGPKSLCNACGIKFRKEEERK 197
>At5g49300.1 68418.m06101 zinc finger (GATA type) family protein
similar to unknown protein (gb|AAF63824.1)
Length = 139
Score = 38.7 bits (86), Expect = 5e-04
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGL 35
+ C +CG + TPLWR G LCNACG+
Sbjct: 36 KTCADCGTSKTPLWRGGPVGPKSLCNACGI 65
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 38.7 bits (86), Expect = 5e-04
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 9 CVNCGATSTPLWRRDGTGH-YLCNACGLYYKMNG 41
C +CG T+TPLWR LCNACG ++ G
Sbjct: 7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKG 40
>At3g06740.1 68416.m00799 zinc finger (GATA type) family protein
Length = 149
Score = 38.7 bits (86), Expect = 5e-04
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 5 EGRECVNCGATSTPLWRRDGTG-HYLCNACGL 35
E + C CG + TPLWR G LCNACG+
Sbjct: 39 EKKSCAICGTSKTPLWRGGPAGPKSLCNACGI 70
>At4g36240.1 68417.m05155 zinc finger (GATA type) family protein
NTL1 protein, curled-leaved tobacco, PIR2:S46419
Length = 238
Score = 38.3 bits (85), Expect = 6e-04
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R C +CG TP WR G LCNACG+ +K +G+ P +P
Sbjct: 164 RCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFK-SGRLLPEYRP 206
>At2g45050.1 68415.m05608 zinc finger (GATA type) family protein
identical to cDNA GATA transcription factor 2 GI:2959731
Length = 264
Score = 38.3 bits (85), Expect = 6e-04
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R C +C + TP WR G LCNACG+ +K +G+ P +P
Sbjct: 179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFK-SGRLVPEYRP 221
>At5g56860.1 68418.m07095 zinc finger (GATA type) family protein
similar to unknown protein (pir |T04270)
Length = 398
Score = 37.9 bits (84), Expect = 8e-04
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGL 35
R C +C T TPLWR G LCNACG+
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGI 259
>At1g08000.2 68414.m00873 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 37.9 bits (84), Expect = 8e-04
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R C +C +TP WR+ +G LCNACG+ +K +G+ P +P
Sbjct: 218 RICTHCETITTPQWRQGPSGPKTLCNACGVRFK-SGRLVPEYRP 260
>At1g08000.1 68414.m00872 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 37.9 bits (84), Expect = 8e-04
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R C +C +TP WR+ +G LCNACG+ +K +G+ P +P
Sbjct: 218 RICTHCETITTPQWRQGPSGPKTLCNACGVRFK-SGRLVPEYRP 260
>At4g26150.1 68417.m03764 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 352
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGL 35
R C +C T TPLWR G LCNACG+
Sbjct: 199 RICSDCNTTKTPLWRSGPRGPKSLCNACGI 228
>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
and genefinder
Length = 315
Score = 37.5 bits (83), Expect = 0.001
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 8 ECVNCGATSTPLWRRDGTGH-YLCNACGLYYK 38
+C +C T+TP WR G LCNACG+ ++
Sbjct: 216 KCTHCETTTTPQWREGPNGRKTLCNACGIRFR 247
>At3g21175.2 68416.m02676 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 295
Score = 35.9 bits (79), Expect = 0.003
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 9 CVNCGAT--STPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIK 48
C +CG + STP+ RR G LCNACGL + G R L K
Sbjct: 217 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK 259
>At3g21175.1 68416.m02675 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 297
Score = 35.9 bits (79), Expect = 0.003
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 9 CVNCGAT--STPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIK 48
C +CG + STP+ RR G LCNACGL + G R L K
Sbjct: 219 CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK 261
>At1g51600.2 68414.m05811 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 35.1 bits (77), Expect = 0.006
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 9 CVNCGA--TSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIK 48
C +CG STP+ RR G LCNACGL + G R L K
Sbjct: 223 CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSK 265
>At1g51600.1 68414.m05810 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 35.1 bits (77), Expect = 0.006
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 9 CVNCGA--TSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIK 48
C +CG STP+ RR G LCNACGL + G R L K
Sbjct: 223 CRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRDLSK 265
>At5g48200.1 68418.m05954 hypothetical protein
Length = 216
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 36 YYKMNGQNRPLIKPKRRLHSETTSARMGVV 65
Y+K+ + + ++ K +LHS TTSA ++
Sbjct: 108 YHKVQNKTKVYVEDKEQLHSPTTSATPSLI 137
>At3g59130.1 68416.m06592 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 329
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 8 ECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP--LIKPKRRLH 54
+C CG + P R+ +Y C C L + N P +I P H
Sbjct: 37 DCFGCGKSDVPWEIRERPLYYYCTICDLEFHKNCLEYPSKIIHPYHPQH 85
>At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii],
Pinus taeda [GI:17978649]; contains non-consensus GG
acceptor splice site at exon 4
Length = 317
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 22 RDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHSETTSAR 61
R+ TG Y+CN+ LY + + PKR T +
Sbjct: 236 REATGRYICNSHSLYTDSLMEKLKNMYPKRNFPESFTEVK 275
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 7 RECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHSETTS 59
REC N + ST R T Y CN G ++ N + KR + TTS
Sbjct: 338 RECPNSSSISTSHGRESQTLCYRCNGSG-HFARECPNSSQVS-KRDRETSTTS 388
>At4g34140.1 68417.m04845 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 418
Score = 25.4 bits (53), Expect = 4.7
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 5 EGRECVNCGATSTPLWRRDGTGHYLCNACGLYYK-MNGQNRPL 46
E R + ++++ + G Y C+ G YYK NG+ PL
Sbjct: 26 EKRLLIESSSSNSGFYHDPNAGWYYCSKDGRYYKHENGEYVPL 68
>At4g09690.1 68417.m01592 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 345
Score = 25.0 bits (52), Expect = 6.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 26 GHYLCNACGLYYKMNGQNRPL-IKPKRRL 53
G+++CNACG M G P IK K R+
Sbjct: 255 GYFICNACG----MRGDRSPYKIKVKSRV 279
>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 594
Score = 24.6 bits (51), Expect = 8.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 2 YAAEGRECVNCGATSTPLWRRDGTGHYLCNACGL-YYKMNGQNRPLIK-PKRRLH 54
Y++ G +C C P R +G Y CN CGL +K ++ P I P + H
Sbjct: 60 YSSTG-QCDGC-----PELRENGLHGYNCNTCGLTVHKECAESSPEINHPSHQRH 108
>At5g24680.1 68418.m02917 expressed protein similar to unknown
protein (pir||T38384)
Length = 399
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 25 TGHYLCNACGLYYKMNGQNRPLIKPKRRLHSET 57
+G ++ N LY++ G +R ++ +RRL T
Sbjct: 294 SGVHITNKGPLYFQHEGHSRTIVGVQRRLQGTT 326
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.134 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,356
Number of Sequences: 28952
Number of extensions: 58950
Number of successful extensions: 174
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 43
length of query: 67
length of database: 12,070,560
effective HSP length: 47
effective length of query: 20
effective length of database: 10,709,816
effective search space: 214196320
effective search space used: 214196320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
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