GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000450-TA|BGIBMGA000450-PA|IPR000679|Zinc finger,
GATA-type
         (67 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   5.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    19   5.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    18   7.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 18.6 bits (36), Expect = 5.8
 Identities = 6/10 (60%), Positives = 6/10 (60%)

Query: 20   WRRDGTGHYL 29
            W R G G YL
Sbjct: 1834 WYRQGVGKYL 1843



 Score = 18.2 bits (35), Expect = 7.7
 Identities = 6/10 (60%), Positives = 6/10 (60%)

Query: 20   WRRDGTGHYL 29
            W R G G YL
Sbjct: 2332 WYRQGDGKYL 2341


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
          protein protein.
          Length = 585

 Score = 18.6 bits (36), Expect = 5.8
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 23 DGTGHYLCNACGLYYKMNGQNR 44
          DG   Y+C     +   N QNR
Sbjct: 40 DGINSYICTCKPGFTGSNCQNR 61


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 18.2 bits (35), Expect = 7.7
 Identities = 4/12 (33%), Positives = 10/12 (83%)

Query: 29  LCNACGLYYKMN 40
           LC +C L+++++
Sbjct: 212 LCKSCDLHHRLS 223


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.134    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,588
Number of Sequences: 317
Number of extensions: 594
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 67
length of database: 114,650
effective HSP length: 44
effective length of query: 23
effective length of database: 100,702
effective search space:  2316146
effective search space used:  2316146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)