Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000450-TA|BGIBMGA000450-PA|IPR000679|Zinc finger,
GATA-type
(67 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 66 4e-13
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 62 1e-11
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 57 3e-10
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 34 0.002
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 27 0.40
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar... 24 2.9
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 24 2.9
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 24 2.9
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 23 3.8
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 23 3.8
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 23 6.6
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 22 8.7
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 22 8.7
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 66.5 bits (155), Expect = 4e-13
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPK 50
C NC T+TPLWRRD +G+ +CNACGLYYK++G +RP+ K
Sbjct: 172 CQNCATTNTPLWRRDESGNPICNACGLYYKIHGVHRPVTMKK 213
Score = 50.4 bits (115), Expect = 3e-08
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 6 GRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPL 46
G+ C NC T+T LWRR LCNACGLY K RP+
Sbjct: 9 GQSCSNCHKTTTSLWRRGPDNSLLCNACGLYQKHRKHARPV 49
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 61.7 bits (143), Expect = 1e-11
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 3 AAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRL 53
A E C NC +T T LWR+D G +CNACGLY +++G NRP+ K ++
Sbjct: 413 ALENLVCANCSSTKTSLWRKDRHGQTVCNACGLYARLHGHNRPIGLKKNKI 463
Score = 55.6 bits (128), Expect = 8e-10
Identities = 24/39 (61%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 9 CVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPL 46
C NCG T TPLWRR ++LCNACGLY K G RPL
Sbjct: 365 CFNCGVTETPLWRRTSDKLNFLCNACGLYNKQYGVMRPL 403
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 57.2 bits (132), Expect = 3e-10
Identities = 23/38 (60%), Positives = 26/38 (68%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPL 46
C NC +TPLWRR G LCNACGL+ K+NG RPL
Sbjct: 635 CTNCQTRTTPLWRRSPDGQPLCNACGLFMKINGVVRPL 672
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 34.3 bits (75), Expect = 0.002
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 9 CVNCGATSTPLWRRDGTGHY---LCNACGLYYKMNGQNRP 45
C NCG T WR + LCNACG+Y+ RP
Sbjct: 351 CQNCGTIKTANWRNATYMNITLMLCNACGIYWTSRRSMRP 390
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 0.40
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 11 NCGATSTPLWRRDGTGHY-LCNACGLYYKMNGQ 42
N T T RR G+ LCNACG+ Y GQ
Sbjct: 376 NVLGTGTFCVRRGPEGNKSLCNACGVAYAKTGQ 408
>SPAC2F7.05c |||translation initiation factor eIF5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 23.8 bits (49), Expect = 2.9
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 9 CVNCGATSTPLW--RRDGTGHYLCNACGLYYKMNGQNR 44
C +C T L ++D T Y C ACG ++G+++
Sbjct: 100 CASCQNPETELSINKKDQTISYDCKACGYRGVIDGRHK 137
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 23.8 bits (49), Expect = 2.9
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 7 RECVNCGATSTPLWRRDGTGHYLCNACGLYYKM 39
REC NCGA++ +D C C L K+
Sbjct: 119 RECPNCGASTFMANHKD---RLYCGRCHLTLKL 148
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 23.8 bits (49), Expect = 2.9
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 7 RECVNCGATSTPLWRRDGTGHYLCNACGLYYKM 39
REC NCGA++ +D C C L K+
Sbjct: 119 RECPNCGASTFMANHKD---RLYCGRCHLTLKL 148
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 23.4 bits (48), Expect = 3.8
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIK 48
C +C P W G ++C C ++ G + +K
Sbjct: 28 CADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVK 67
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 23.4 bits (48), Expect = 3.8
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 26 GHYLCNACGLYYKMNGQNRPLIKPKRRL 53
G + CN CG K + ++ ++ ++RL
Sbjct: 158 GTFACNVCGTELKDDEESAEMMSSQKRL 185
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 22.6 bits (46), Expect = 6.6
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNG 41
C+ C L RR+ + C C Y NG
Sbjct: 565 CLACAVVQRSLERRNQSTSAACQQCFSQYCWNG 597
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 22.2 bits (45), Expect = 8.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 39 MNGQNRPLIKPKRRLHSE 56
+NGQ P + PKRR E
Sbjct: 154 VNGQKNPEMPPKRRKTEE 171
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 22.2 bits (45), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 37 YKMNGQNRPLIKPKRRLHSETTSARMGV 64
Y MN Q +PL + K R + T+ +GV
Sbjct: 561 YPMNAQGKPLSRRKAR---QLTALELGV 585
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.134 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 318,920
Number of Sequences: 5004
Number of extensions: 10080
Number of successful extensions: 32
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 15
length of query: 67
length of database: 2,362,478
effective HSP length: 47
effective length of query: 20
effective length of database: 2,127,290
effective search space: 42545800
effective search space used: 42545800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)
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