Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000450-TA|BGIBMGA000450-PA|IPR000679|Zinc finger,
GATA-type
(67 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0442 + 3495333-3496484 50 2e-07
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 49 4e-07
05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107 49 4e-07
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 49 4e-07
01_06_0154 - 27049218-27049517,27049679-27050107 48 9e-07
05_06_0110 + 25632514-25632834,25633200-25634039 47 2e-06
01_06_0683 - 31173763-31174635,31175146-31175436 45 7e-06
05_07_0153 - 28051496-28051801,28051933-28052271 45 9e-06
03_06_0556 + 34699994-34700017,34700116-34700229,34700350-34700622 42 6e-05
02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978 42 6e-05
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859 42 8e-05
11_01_0560 - 4413174-4414469 41 1e-04
02_01_0371 + 2664488-2664862,2664973-2665059,2665155-2665267,266... 40 2e-04
10_08_0898 + 21424379-21424792,21424974-21425723 39 4e-04
03_05_1042 - 29893649-29893721,29893960-29894033,29894111-298941... 39 6e-04
03_01_0316 + 2487917-2488003,2488104-2488676 38 8e-04
02_05_1145 + 34429060-34429401,34430053-34430967 38 8e-04
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818 38 0.001
03_01_0217 - 1712979-1713794 38 0.001
02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496 38 0.001
12_02_1180 + 26727171-26727239,26728782-26729642 36 0.005
03_05_0713 - 27070063-27070126,27070202-27070290,27070369-270704... 35 0.007
06_03_1267 - 28851286-28851306,28851452-28851520,28852031-288520... 33 0.022
05_07_0238 + 28597399-28598286 33 0.022
07_03_1267 + 25318220-25318407,25318674-25318844,25319086-253191... 33 0.038
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 32 0.050
02_01_0162 - 1126273-1126593,1126950-1127117,1127211-1127501,112... 29 0.35
03_01_0413 + 3179516-3179553,3179792-3179836,3179869-3179926,318... 27 1.9
07_03_0388 + 17550034-17550267 27 2.5
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 27 2.5
06_03_0974 - 26459747-26460190,26460278-26460946 27 2.5
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 25 5.7
11_06_0062 + 19709801-19710832,19712383-19712568,19712661-197128... 25 7.6
03_02_1002 + 13124398-13124994,13125116-13125346,13125993-131262... 25 7.6
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804... 25 10.0
>12_01_0442 + 3495333-3496484
Length = 383
Score = 50.4 bits (115), Expect = 2e-07
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 7 RECVNCGATSTPLWRRDGTGH-YLCNACGLYYKMNGQNRPLIKPK 50
R CV+CG+T TP WR TG LCNACG+ Y+ G+ P +PK
Sbjct: 246 RSCVHCGSTETPQWREGPTGRGTLCNACGVRYR-QGRLLPEYRPK 289
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 3 AAEGRECVNCGATSTPLWRRDGTGH-YLCNACGLYYKMNG 41
A R C+NC A TP WR G LCNACG+ + G
Sbjct: 114 AKRARRCLNCDAVETPQWRSGPMGRSTLCNACGVRLRAVG 153
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 49.2 bits (112), Expect = 4e-07
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 3 AAEGRECVNCGATSTPLWRRDGTGH-YLCNACGLYYKMNGQNRPLIKPKR 51
AA+G +C +CG T TP WR GH LCNAC + Y+ +G+ P +P R
Sbjct: 597 AAKGLQCRHCGTTETPQWRHGPEGHRTLCNACSMRYR-SGKLVPEYRPLR 645
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 3 AAEGRECVNCGATSTPLWRRD-GTGHYLCNACGLYYKMNGQ 42
A GREC +CG T TP WR + LCNACG Y+ +GQ
Sbjct: 769 ARAGRECAHCGTTKTPAWRLGPDSRRKLCNACGNKYR-SGQ 808
Score = 38.7 bits (86), Expect = 6e-04
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 7 RECVNCGATSTPLWRR--DGTGHYLCNACGLYYKMNGQNRPLIKP 49
R C +CG T TP W D G LCNACG Y+ G+ P +P
Sbjct: 991 RRCTHCGTTKTPAWLSGPDSRGK-LCNACGKQYR-KGRLVPEYRP 1033
Score = 32.7 bits (71), Expect = 0.038
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Query: 6 GRECVNCGATSTPLWR-RDG 24
G +C +CG+T TPLWR RDG
Sbjct: 928 GWQCRHCGSTETPLWRERDG 947
>05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107
Length = 151
Score = 49.2 bits (112), Expect = 4e-07
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGL-YYKMNGQNRPLIKPKRRLH 54
R CV CGAT+TP+WR TG LCNACG+ Y K Q L K +++ H
Sbjct: 25 RCCVECGATTTPMWRGGPTGPRSLCNACGIRYRKKRRQELGLDKKQQQEH 74
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 49.2 bits (112), Expect = 4e-07
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 3 AAEGRE-CVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQ---NRPLIKPKRRLHSE 56
A EGR CV C AT+TP+WR TG LCNACG+ Y+ + L +P+++ H E
Sbjct: 663 AEEGRRSCVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRRQDLGLDLNQPQKQEHGE 721
>01_06_0154 - 27049218-27049517,27049679-27050107
Length = 242
Score = 48.0 bits (109), Expect = 9e-07
Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 3 AAEGRECVNCGATSTPLWRRDGTG-HYLCNACGLYYK 38
A+ R C NC TSTPLWR G LCNACG+ YK
Sbjct: 118 ASAPRRCANCDTTSTPLWRNGPRGPKSLCNACGIRYK 154
>05_06_0110 + 25632514-25632834,25633200-25634039
Length = 386
Score = 46.8 bits (106), Expect = 2e-06
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 3 AAEGRECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
AAEGR C++C TP WR G LCNACG+ YK +G+ P +P
Sbjct: 249 AAEGRRCLHCETDKTPQWRTGPMGPKTLCNACGVRYK-SGRLVPEYRP 295
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 45.2 bits (102), Expect = 7e-06
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 3 AAEGRECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
A EGR C++C TP WR G LCNACG+ YK +G+ P +P
Sbjct: 258 AGEGRRCLHCETDKTPQWRTGPMGPKTLCNACGVRYK-SGRLVPEYRP 304
>05_07_0153 - 28051496-28051801,28051933-28052271
Length = 214
Score = 44.8 bits (101), Expect = 9e-06
Identities = 19/33 (57%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYK 38
R C NC STPLWR G LCNACG+ YK
Sbjct: 92 RRCANCDTMSTPLWRNGPRGPKSLCNACGIRYK 124
>03_06_0556 +
34699994-34700017,34700116-34700229,34700350-34700622
Length = 136
Score = 41.9 bits (94), Expect = 6e-05
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 3 AAEGRECVNCGATSTPLWRRDGTG-HYLCNACGLYYK 38
+ E + C +C T TPLWR +G LCNACG+ Y+
Sbjct: 21 SGEPKACTDCHTTKTPLWRGGPSGPKSLCNACGIRYR 57
>02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978
Length = 387
Score = 41.9 bits (94), Expect = 6e-05
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 3 AAEGRECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
A R C +CG TP WR G LCNACG+ YK +G+ P +P
Sbjct: 300 ATGDRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYK-SGRLLPEYRP 346
>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
Length = 429
Score = 41.5 bits (93), Expect = 8e-05
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R C +CG TP WR G LCNACG+ YK +G+ P +P
Sbjct: 342 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYK-SGRLLPEYRP 384
>11_01_0560 - 4413174-4414469
Length = 431
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 7 RECVNCGATSTPLWRR--DGTGHYLCNACGLYYKMN 40
R C +CG + TP WR DG G LCNACG+ KM+
Sbjct: 361 RRCSHCGTSETPQWRMGPDGPG-TLCNACGIRSKMD 395
>02_01_0371 +
2664488-2664862,2664973-2665059,2665155-2665267,
2665506-2665634,2666688-2666793,2667296-2667367,
2667702-2667806
Length = 328
Score = 39.9 bits (89), Expect = 2e-04
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 3 AAEGR-----ECVNCG--ATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIK----PK 50
A EGR EC +CG A STP+ RR G LCNACGL + G R + K P
Sbjct: 225 AVEGRPPSAAECHHCGISAASTPMMRRGPDGPRTLCNACGLMWANKGTMREVTKGPPVPL 284
Query: 51 RRLHSETTSARMGVV 65
+ + + T + G+V
Sbjct: 285 QIVPAATNDVQNGIV 299
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 39.1 bits (87), Expect = 4e-04
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R C +C + TP WR G LCNACG+ +K +G+ P +P
Sbjct: 276 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFK-SGRLMPEYRP 318
>03_05_1042 -
29893649-29893721,29893960-29894033,29894111-29894179,
29894333-29894438,29894548-29894664,29895412-29895527,
29895612-29895698,29897281-29897309,29897914-29898169
Length = 308
Score = 38.7 bits (86), Expect = 6e-04
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 9 CVNCGATS--TPLWRRDGTG-HYLCNACGLYYKMNGQNR-PLIKPKRRLHSETTSARMG 63
C NCG +S TP RR G LCNACGL + G R PL PK + ++ G
Sbjct: 203 CQNCGISSRLTPAMRRGPAGPRSLCNACGLMWANKGTLRSPLNAPKMTVQHPADLSKTG 261
>03_01_0316 + 2487917-2488003,2488104-2488676
Length = 219
Score = 38.3 bits (85), Expect = 8e-04
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 4 AEGRECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
A R C +C TP WR G LCNACG+ +K +G+ P +P
Sbjct: 119 APRRRCTHCAVDETPQWRLGPDGPRTLCNACGVRFK-SGRLFPEYRP 164
>02_05_1145 + 34429060-34429401,34430053-34430967
Length = 418
Score = 38.3 bits (85), Expect = 8e-04
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
R C +C TP WR G LCNACG+ YK +G+ P +P
Sbjct: 333 RRCTHCQIEKTPQWRAGPLGPKTLCNACGVRYK-SGRLFPEYRP 375
>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
Length = 375
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGL 35
R C +C T TPLWR G LCNACG+
Sbjct: 186 RVCSDCNTTKTPLWRSGPCGPKSLCNACGI 215
>03_01_0217 - 1712979-1713794
Length = 271
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 5 EGRECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMN 40
E + C +C T TP WR G LCNACG+ Y+++
Sbjct: 184 EEKRCGHCQTTETPQWRVGPDGPSTLCNACGIRYRID 220
>02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496
Length = 353
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGL 35
R C +C T TPLWR G LCNACG+
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGI 205
>12_02_1180 + 26727171-26727239,26728782-26729642
Length = 309
Score = 35.5 bits (78), Expect = 0.005
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 7 RECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
+ C +C + TP WR G LCNACG+ +K +G+ P +P
Sbjct: 237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFK-SGRLLPEYRP 279
>03_05_0713 -
27070063-27070126,27070202-27070290,27070369-27070428,
27071110-27071215,27071309-27071428,27072340-27072476,
27072561-27072647,27073660-27073956
Length = 319
Score = 35.1 bits (77), Expect = 0.007
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 8 ECVNCGATS--TPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKPK 50
+C NCG + TP RR G LCNACGL + G R K K
Sbjct: 214 KCQNCGTSEKMTPAMRRGPAGPRTLCNACGLMWANKGTLRNCPKAK 259
>06_03_1267 -
28851286-28851306,28851452-28851520,28852031-28852066,
28852381-28852486,28852869-28852997,28853685-28853797,
28853907-28853993,28854106-28854543
Length = 332
Score = 33.5 bits (73), Expect = 0.022
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 8 ECVNCG--ATSTPLWRRDGTG-HYLCNACGLYY 37
EC +CG A +TP+ RR G LCNACGL +
Sbjct: 256 ECHHCGINAKATPMMRRGPDGPRTLCNACGLMW 288
>05_07_0238 + 28597399-28598286
Length = 295
Score = 33.5 bits (73), Expect = 0.022
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 7 RECVNCGATSTPLWRRDGTG 26
R C NCG STPLWR G
Sbjct: 128 RRCANCGTASTPLWRNGPRG 147
>07_03_1267 +
25318220-25318407,25318674-25318844,25319086-25319188,
25319394-25319885,25320723-25321156,25321333-25321388,
25321711-25321775,25322139-25322147
Length = 505
Score = 32.7 bits (71), Expect = 0.038
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 9 CVNCGAT--STPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIK 48
C+ CG + +TP RR G LCNACG+ Y+ G+ R +I+
Sbjct: 121 CLRCGISGNATPHMRRGPDGPRTLCNACGIAYR-KGKMRRMIE 162
>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 32.3 bits (70), Expect = 0.050
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 9 CVNCGATS--TPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKP 49
C NCG +S TP+ R G CNACGL + + + R + P
Sbjct: 1400 CTNCGESSDATPMMRHAPNGTKSFCNACGLMWANSRKIRKIRNP 1443
>02_01_0162 -
1126273-1126593,1126950-1127117,1127211-1127501,
1127688-1127763,1127841-1127886,1128006-1128072,
1128162-1128234,1128321-1128561,1128669-1128822,
1128915-1129042,1129481-1129535,1129629-1129838
Length = 609
Score = 29.5 bits (63), Expect = 0.35
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 5 EGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHSETTSARMGV 64
E VN T + W+R T Y+C+ ++ ++ +KP+ HS + + G
Sbjct: 349 ENLSLVNKNGTPSKTWKRSITHVYMCHLIQMHLDKEKASQNRVKPEEVCHSHISRSPDGS 408
Query: 65 VYS 67
S
Sbjct: 409 TIS 411
>03_01_0413 +
3179516-3179553,3179792-3179836,3179869-3179926,
3181040-3181174
Length = 91
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 19 LWRRDGTGHYLCNACGLYYKMNGQNRP 45
LW R+G ACGL Y++ GQN P
Sbjct: 25 LWFREGIFARSDTACGLIYRV-GQNEP 50
>07_03_0388 + 17550034-17550267
Length = 77
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 4 AEGRECVNCGATSTPLWRRDGTGHYLCN 31
+EGRE CG S P +RR T C+
Sbjct: 21 SEGRERQQCGEVSRPGYRRVATAPLRCH 48
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 4 AEGRECVNCGATSTPLWR 21
A G CG TSTP+WR
Sbjct: 46 AHGTGWCACGTTSTPIWR 63
>06_03_0974 - 26459747-26460190,26460278-26460946
Length = 370
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 6 GRECVNCGATSTPLWRRDGTGHYLCNAC 33
GR C C A+ + R G YLC AC
Sbjct: 11 GRRCGACEASPAAVHCRGCGGVYLCTAC 38
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 9 CVNCGATSTPLWRRDGTG-HYLCNACG 34
C C A P R G H++CN CG
Sbjct: 430 CSRCKAYINPFMRFIDQGKHFVCNLCG 456
>11_06_0062 +
19709801-19710832,19712383-19712568,19712661-19712867,
19712940-19713078,19713172-19713380,19713520-19714134
Length = 795
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 37 YKMNGQNRPLIKPKRRLHSETTSAR 61
YK NG+N ++ KRRL + S +
Sbjct: 331 YKWNGKNWRIVSAKRRLSHQFVSGK 355
>03_02_1002 +
13124398-13124994,13125116-13125346,13125993-13126282,
13126405-13126498
Length = 403
Score = 25.0 bits (52), Expect = 7.6
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHSETT 58
C C A ++RR G G +LC+ C +G R P LH +T
Sbjct: 81 CAACAAAGA-VFRR-GAGGFLCSNCDFSRHRHGGER---DPAAPLHDRST 125
>03_05_1111 -
30479793-30479823,30479887-30479978,30480261-30480410,
30482229-30482354,30482563-30482628,30483134-30483214,
30483310-30483422,30483553-30483721,30484253-30484330,
30485489-30485752,30486239-30486379,30486548-30486759,
30486819-30486940,30487281-30487398,30487925-30487997
Length = 611
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 14 ATSTPLWRRDGTGHYLCNACGLYYKMNGQN 43
A ++P W D + Y+C+ G + +N N
Sbjct: 16 ALASPSWLHDTSSCYICSISGTHSLVNHPN 45
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.134 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,077
Number of Sequences: 37544
Number of extensions: 78623
Number of successful extensions: 179
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 41
length of query: 67
length of database: 14,793,348
effective HSP length: 47
effective length of query: 20
effective length of database: 13,028,780
effective search space: 260575600
effective search space used: 260575600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
- SilkBase 1999-2023 -