GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000450-TA|BGIBMGA000450-PA|IPR000679|Zinc finger,
GATA-type
         (67 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...   117   5e-29
AJ404478-1|CAC16182.1|   77|Anopheles gambiae putative GATA fact...    56   1e-10
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    21   5.8  

>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score =  117 bits (281), Expect = 5e-29
 Identities = 48/60 (80%), Positives = 54/60 (90%)

Query: 5   EGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHSETTSARMGV 64
           EGRECVNCGA STPLWRRDGTGHYLCNACGLY+KMNG NRPLIKP +RL S+T + R+G+
Sbjct: 116 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVSQTATRRLGL 175



 Score = 62.9 bits (146), Expect = 1e-12
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query: 9   CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPK 50
           C NCG  +T LWRR+  G  +CNACGLY+K++G NRPL   K
Sbjct: 177 CTNCGTRTTTLWRRNNDGEPVCNACGLYFKLHGVNRPLAMRK 218


>AJ404478-1|CAC16182.1|   77|Anopheles gambiae putative GATA
          factor protein.
          Length = 77

 Score = 56.4 bits (130), Expect = 1e-10
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 12 CGATSTPLWRRDGTGHYLCNACGLYYKMN-GQNRPLIKPKRRLHSETTSARMG 63
          CG++ TPLWRRD  GH LCNAC LY + N G NRP  + ++   +  T    G
Sbjct: 1  CGSSDTPLWRRDIVGHTLCNACALYTRQNPGTNRPPNRSQKAKQTVKTPPAQG 53



 Score = 28.3 bits (60), Expect = 0.029
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 6  GRECVNCGATSTPLWRRD 23
          G  C NC  T+T LWRR+
Sbjct: 58 GVTCANCQTTTTTLWRRN 75


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 2   YAAEGRECVNCGATSTPLWRRDGTGH 27
           Y     EC N G     +   DGT H
Sbjct: 505 YRERADECSNAGTYKCGICECDGTYH 530


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.134    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,264
Number of Sequences: 2123
Number of extensions: 2684
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 67
length of database: 516,269
effective HSP length: 45
effective length of query: 22
effective length of database: 420,734
effective search space:  9256148
effective search space used:  9256148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)