Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000450-TA|BGIBMGA000450-PA|IPR000679|Zinc finger,
GATA-type
(67 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical pr... 94 1e-20
Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical pr... 94 1e-20
X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein. 94 1e-20
Z50027-6|CAD44111.1| 72|Caenorhabditis elegans Hypothetical pr... 58 1e-09
Z49867-3|CAA90029.2| 433|Caenorhabditis elegans Hypothetical pr... 55 5e-09
U25175-1|AAC36130.1| 433|Caenorhabditis elegans GATA-factor pro... 55 5e-09
Z69663-3|CAA93510.2| 226|Caenorhabditis elegans Hypothetical pr... 52 4e-08
AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like tra... 52 4e-08
AF146517-1|AAD33964.1| 226|Caenorhabditis elegans GATA transcri... 52 4e-08
AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-lik... 52 4e-08
AY462219-1|AAR26006.1| 358|Caenorhabditis elegans GATA transcri... 51 1e-07
AF353302-1|AAK32716.1| 376|Caenorhabditis elegans GATA-like tra... 51 1e-07
AF068708-9|AAC17756.1| 198|Caenorhabditis elegans Hypothetical ... 51 1e-07
AF067612-7|AAD36952.2| 376|Caenorhabditis elegans Egg laying de... 51 1e-07
Z81555-1|CAB04516.1| 242|Caenorhabditis elegans Hypothetical pr... 48 1e-06
Z81555-3|CAB04513.1| 221|Caenorhabditis elegans Hypothetical pr... 44 1e-05
AF026555-1|AAB97516.1| 221|Caenorhabditis elegans GATA transcri... 44 1e-05
U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and en... 34 0.014
AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type tra... 34 0.014
Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical pr... 33 0.019
AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type tra... 33 0.019
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 31 0.075
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 31 0.075
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 31 0.075
Z50006-3|CAA90299.1| 334|Caenorhabditis elegans Hypothetical pr... 30 0.17
U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of p... 27 1.2
AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of... 27 1.2
AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of... 27 1.2
Z68302-8|CAA92632.2| 342|Caenorhabditis elegans Hypothetical pr... 27 2.1
Z68134-4|CAA92224.1| 567|Caenorhabditis elegans Hypothetical pr... 26 3.7
AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical ... 25 6.5
AC024206-3|AAF36052.1| 561|Caenorhabditis elegans Hypothetical ... 25 6.5
Z92973-3|CAB07491.1| 244|Caenorhabditis elegans Hypothetical pr... 25 8.7
>Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical
protein W09C2.1b protein.
Length = 416
Score = 93.9 bits (223), Expect = 1e-20
Identities = 38/63 (60%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query: 2 YAAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHSETTSAR 61
++ E RECVNCG +TPLWRRDG+G+YLCNACGLY+KMN RPL+KPK+R + R
Sbjct: 210 FSTEDRECVNCGVHNTPLWRRDGSGNYLCNACGLYFKMNHHARPLVKPKKR--QQNAQKR 267
Query: 62 MGV 64
G+
Sbjct: 268 TGI 270
Score = 64.5 bits (150), Expect = 9e-12
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 6 GRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPK 50
G ECVNC +T LWRR+G GH +CNACGLY+K++ RP+ K
Sbjct: 269 GIECVNCRTNTTTLWRRNGEGHPVCNACGLYFKLHKVERPITMKK 313
>Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical
protein W09C2.1a protein.
Length = 488
Score = 93.9 bits (223), Expect = 1e-20
Identities = 38/63 (60%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query: 2 YAAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHSETTSAR 61
++ E RECVNCG +TPLWRRDG+G+YLCNACGLY+KMN RPL+KPK+R + R
Sbjct: 282 FSTEDRECVNCGVHNTPLWRRDGSGNYLCNACGLYFKMNHHARPLVKPKKR--QQNAQKR 339
Query: 62 MGV 64
G+
Sbjct: 340 TGI 342
Score = 64.5 bits (150), Expect = 9e-12
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 6 GRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPK 50
G ECVNC +T LWRR+G GH +CNACGLY+K++ RP+ K
Sbjct: 341 GIECVNCRTNTTTLWRRNGEGHPVCNACGLYFKLHKVERPITMKK 385
>X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein.
Length = 416
Score = 93.9 bits (223), Expect = 1e-20
Identities = 38/63 (60%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query: 2 YAAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHSETTSAR 61
++ E RECVNCG +TPLWRRDG+G+YLCNACGLY+KMN RPL+KPK+R + R
Sbjct: 210 FSTEDRECVNCGVHNTPLWRRDGSGNYLCNACGLYFKMNHHARPLVKPKKR--QQNAQKR 267
Query: 62 MGV 64
G+
Sbjct: 268 TGI 270
Score = 64.5 bits (150), Expect = 9e-12
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 6 GRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPK 50
G ECVNC +T LWRR+G GH +CNACGLY+K++ RP+ K
Sbjct: 269 GIECVNCRTNTTTLWRRNGEGHPVCNACGLYFKLHKVERPITMKK 313
>Z50027-6|CAD44111.1| 72|Caenorhabditis elegans Hypothetical
protein C39B10.6 protein.
Length = 72
Score = 57.6 bits (133), Expect = 1e-09
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHS 55
C NC T+T LWRR G +CNACGLY+K++ RP+ K + H+
Sbjct: 16 CSNCNGTNTTLWRRKAEGDPVCNACGLYFKLHHVTRPIPMKKNKKHA 62
>Z49867-3|CAA90029.2| 433|Caenorhabditis elegans Hypothetical
protein C33D3.1 protein.
Length = 433
Score = 55.2 bits (127), Expect = 5e-09
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 5 EGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPL-IKPKRRLHSETTSARMG 63
+G C NC T+T LWRR+ G +CNACGLY+K++ RP +K + L + ++ G
Sbjct: 233 QGLVCSNCNGTNTTLWRRNAEGDPVCNACGLYFKLHHIPRPTSMKKEGALQTRKRKSKSG 292
>U25175-1|AAC36130.1| 433|Caenorhabditis elegans GATA-factor
protein.
Length = 433
Score = 55.2 bits (127), Expect = 5e-09
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 5 EGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPL-IKPKRRLHSETTSARMG 63
+G C NC T+T LWRR+ G +CNACGLY+K++ RP +K + L + ++ G
Sbjct: 233 QGLVCSNCNGTNTTLWRRNAEGDPVCNACGLYFKLHHIPRPTSMKKEGALQTRKRKSKSG 292
>Z69663-3|CAA93510.2| 226|Caenorhabditis elegans Hypothetical
protein K02B9.4 protein.
Length = 226
Score = 52.4 bits (120), Expect = 4e-08
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPL 46
C NC T LWRR+G G CNAC LY++ N + RPL
Sbjct: 153 CSNCKTRETTLWRRNGEGGVECNACNLYFRKNNRKRPL 190
>AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like
transcription factorELT-6 protein.
Length = 367
Score = 52.4 bits (120), Expect = 4e-08
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 8 ECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPL 46
+C NC T WRRD G +CNACGLYY+++ +RP+
Sbjct: 264 KCSNCSTIKTTAWRRDLEGKLVCNACGLYYRLHRTHRPV 302
>AF146517-1|AAD33964.1| 226|Caenorhabditis elegans GATA
transcription factor ELT-3 protein.
Length = 226
Score = 52.4 bits (120), Expect = 4e-08
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPL 46
C NC T LWRR+G G CNAC LY++ N + RPL
Sbjct: 153 CSNCKTRETTLWRRNGEGGVECNACNLYFRKNNRKRPL 190
>AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-like
transcription factorfamily protein 6 protein.
Length = 367
Score = 52.4 bits (120), Expect = 4e-08
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 8 ECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPL 46
+C NC T WRRD G +CNACGLYY+++ +RP+
Sbjct: 264 KCSNCSTIKTTAWRRDLEGKLVCNACGLYYRLHRTHRPV 302
>AY462219-1|AAR26006.1| 358|Caenorhabditis elegans GATA
transcription factor EGL-18A protein.
Length = 358
Score = 50.8 bits (116), Expect = 1e-07
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRL 53
C NC T WRRD G +CN CGLYY+++ RP+ K +
Sbjct: 266 CSNCRTDKTTAWRRDAEGKLVCNPCGLYYRLHKVRRPIEMRKNHI 310
>AF353302-1|AAK32716.1| 376|Caenorhabditis elegans GATA-like
transcription factorELT-5 protein.
Length = 376
Score = 50.8 bits (116), Expect = 1e-07
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRL 53
C NC T WRRD G +CN CGLYY+++ RP+ K +
Sbjct: 266 CSNCRTDKTTAWRRDAEGKLVCNPCGLYYRLHKVRRPIEMRKNHI 310
>AF068708-9|AAC17756.1| 198|Caenorhabditis elegans Hypothetical
protein C18G1.2 protein.
Length = 198
Score = 50.8 bits (116), Expect = 1e-07
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRR 52
C +C T+T LWR++ G+ CNAC LYY+ N RPL K++
Sbjct: 143 CSHCSTTTTTLWRKNDEGNLECNACNLYYRHNKVKRPLSLCKQK 186
>AF067612-7|AAD36952.2| 376|Caenorhabditis elegans Egg laying
defective protein 18 protein.
Length = 376
Score = 50.8 bits (116), Expect = 1e-07
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRL 53
C NC T WRRD G +CN CGLYY+++ RP+ K +
Sbjct: 266 CSNCRTDKTTAWRRDAEGKLVCNPCGLYYRLHKVRRPIEMRKNHI 310
>Z81555-1|CAB04516.1| 242|Caenorhabditis elegans Hypothetical
protein F58E10.5 protein.
Length = 242
Score = 47.6 bits (108), Expect = 1e-06
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP 45
C NCG T LWRR+ G CN C LY ++ G RP
Sbjct: 179 CSNCGCRETKLWRRNEQGETECNPCNLYERVKGHKRP 215
>Z81555-3|CAB04513.1| 221|Caenorhabditis elegans Hypothetical
protein F58E10.2 protein.
Length = 221
Score = 44.4 bits (100), Expect = 1e-05
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 11 NCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP 45
NC T LWRR +G CN C LY++ NG RP
Sbjct: 142 NCRTRETTLWRRTDSGAIECNGCSLYFRKNGIQRP 176
>AF026555-1|AAB97516.1| 221|Caenorhabditis elegans GATA
transcription factor END-1 protein.
Length = 221
Score = 44.4 bits (100), Expect = 1e-05
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 11 NCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP 45
NC T LWRR +G CN C LY++ NG RP
Sbjct: 142 NCRTRETTLWRRTDSGAIECNGCSLYFRKNGIQRP 176
>U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and
endoderm determinationprotein 2 protein.
Length = 174
Score = 33.9 bits (74), Expect = 0.014
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 8 ECVNCGATSTPLWRRDGTGHYL-CNACGLYYKMNGQNRPL 46
+C NC T T WR + + CNAC +Y + + RP+
Sbjct: 113 QCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNETRPV 152
>AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 33.9 bits (74), Expect = 0.014
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 8 ECVNCGATSTPLWRRDGTGHYL-CNACGLYYKMNGQNRPL 46
+C NC T T WR + + CNAC +Y + + RP+
Sbjct: 113 QCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNETRPV 152
>Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical
protein T24D3.1 protein.
Length = 174
Score = 33.5 bits (73), Expect = 0.019
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 8 ECVNCGATSTPLWRRDGTGHYL-CNACGLYYKMNGQNRPL 46
+C NC T T WR + + CNAC +Y + + RP+
Sbjct: 113 QCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPV 152
>AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 33.5 bits (73), Expect = 0.019
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 8 ECVNCGATSTPLWRRDGTGHYL-CNACGLYYKMNGQNRPL 46
+C NC T T WR + + CNAC +Y + + RP+
Sbjct: 113 QCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPV 152
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
defective protein 27,isoform b protein.
Length = 1124
Score = 31.5 bits (68), Expect = 0.075
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 6 GRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPL 46
GR C +C + W G LC C L+YK GQ R +
Sbjct: 433 GRACHHCYGAESKDWHH-ANGLLLCTDCRLHYKKYGQLRQI 472
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying
defective protein 27,isoform a protein.
Length = 1129
Score = 31.5 bits (68), Expect = 0.075
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 6 GRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPL 46
GR C +C + W G LC C L+YK GQ R +
Sbjct: 436 GRACHHCYGAESKDWHH-ANGLLLCTDCRLHYKKYGQLRQI 475
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 31.5 bits (68), Expect = 0.075
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 6 GRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPL 46
GR C +C + W G LC C L+YK GQ R +
Sbjct: 436 GRACHHCYGAESKDWHH-ANGLLLCTDCRLHYKKYGQLRQI 475
>Z50006-3|CAA90299.1| 334|Caenorhabditis elegans Hypothetical
protein T07C5.2 protein.
Length = 334
Score = 30.3 bits (65), Expect = 0.17
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 8 ECVNCGATSTPLWRRDGTGHYLCNACGLYYK 38
+CV CG ST L++ G YLCN+C L+++
Sbjct: 6 DCVVCGV-STHLFKY---GKYLCNSCDLFFR 32
>U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of
presenilin defectprotein 1 protein.
Length = 558
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP 45
C NCG + + + C AC +Y+ G RP
Sbjct: 277 CDNCGEKAENMQINNAMNRPECRACLIYFNQTGVPRP 313
>AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of
presenilin 1 protein.
Length = 558
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP 45
C NCG + + + C AC +Y+ G RP
Sbjct: 277 CDNCGEKAENMQINNAMNRPECRACLIYFNQTGVPRP 313
>AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of
presenilin defect protein.
Length = 558
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP 45
C NCG + + + C AC +Y+ G RP
Sbjct: 277 CDNCGEKAENMQINNAMNRPECRACLIYFNQTGVPRP 313
>Z68302-8|CAA92632.2| 342|Caenorhabditis elegans Hypothetical
protein ZK792.7 protein.
Length = 342
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 36 YYKMNGQNRPLIKPKRRLHSETTSARMGV 64
Y+K GQN PLI+ L + T S RMGV
Sbjct: 253 YFKNIGQNEPLIE----LQTPTCSYRMGV 277
>Z68134-4|CAA92224.1| 567|Caenorhabditis elegans Hypothetical
protein T27A8.5 protein.
Length = 567
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 28 YLCNACGLYYKMNGQNRPLIKPKRRLHSETTSARMG 63
+ C A YYK G NR L +P ++ + R G
Sbjct: 211 FFCLAPETYYKHEGPNRKLSRPGHLTIQDSINGRNG 246
>AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical
protein Y74C9A.4b protein.
Length = 564
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP 45
C NC A S L + C C LY+++ RP
Sbjct: 275 CENCNAKSDLLILNRVMSRHECKPCILYFRLMRVPRP 311
>AC024206-3|AAF36052.1| 561|Caenorhabditis elegans Hypothetical
protein Y74C9A.4a protein.
Length = 561
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 9 CVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP 45
C NC A S L + C C LY+++ RP
Sbjct: 272 CENCNAKSDLLILNRVMSRHECKPCILYFRLMRVPRP 308
>Z92973-3|CAB07491.1| 244|Caenorhabditis elegans Hypothetical
protein Y6G8.3 protein.
Length = 244
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 19 LWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLHSETTSARM 62
L R D G ++C +CG +++ N L + +R LH + M
Sbjct: 16 LKRPDLRGKFICASCGQHFQ---HNASLNRHRRLLHGNEHTCMM 56
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.134 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,696
Number of Sequences: 27539
Number of extensions: 63509
Number of successful extensions: 164
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 36
length of query: 67
length of database: 12,573,161
effective HSP length: 47
effective length of query: 20
effective length of database: 11,278,828
effective search space: 225576560
effective search space used: 225576560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
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