GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000450-TA|BGIBMGA000450-PA|IPR000679|Zinc finger,
GATA-type
         (67 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   2.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    18   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    18   8.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
          protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 22 RDGTGHYLCNACG 34
          ++G   Y CN CG
Sbjct: 86 KEGEDPYRCNICG 98



 Score = 19.0 bits (37), Expect = 5.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)

Query: 24  GTGHYLCNACG 34
           G   Y+C ACG
Sbjct: 200 GEKPYVCKACG 210


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 21  RRDGTGHYLCNACGLYYK 38
           R D T   +C+AC +  K
Sbjct: 347 RTDTTYRVVCDACSMGVK 364


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 25  TGHYLCNACGLY 36
           +G Y C A  LY
Sbjct: 882 SGAYFCQASNLY 893


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.2 bits (35), Expect = 8.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 25  TGHYLCNACGLY 36
           +G Y C A  LY
Sbjct: 878 SGAYFCQASNLY 889


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.134    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,483
Number of Sequences: 429
Number of extensions: 662
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 67
length of database: 140,377
effective HSP length: 45
effective length of query: 22
effective length of database: 121,072
effective search space:  2663584
effective search space used:  2663584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)