Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000449-TA|BGIBMGA000449-PA|undefined
         (205 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    30   0.015
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          30   0.015
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    22   4.0  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 29.9 bits (64), Expect = 0.015
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 124 PSKQREGAQPDSCAQDT------SQPSGEYNAQYNAAGGDYYNYQGKGYSGAQQQNK 174
           P   +   + ++C  DT      + P   +N QYN A  +Y NYQ +G+S    Q K
Sbjct: 184 PGSSQVVVKDETCQYDTESSYQFNDPQFNFNYQYNQAYSNYNNYQ-EGFSCQYYQGK 239


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 29.9 bits (64), Expect = 0.015
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 124 PSKQREGAQPDSCAQDT------SQPSGEYNAQYNAAGGDYYNYQGKGYSGAQQQNK 174
           P   +   + ++C  DT      + P   +N QYN A  +Y NYQ +G+S    Q K
Sbjct: 204 PGSSQVVVKDETCQYDTESSYQFNDPQFNFNYQYNQAYSNYNNYQ-EGFSCQYYQGK 259


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 138 QDTSQPSGEYNAQYN 152
           Q+   P GEY ++YN
Sbjct: 101 QEKYDPKGEYKSRYN 115


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.127    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,907
Number of Sequences: 317
Number of extensions: 1408
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 205
length of database: 114,650
effective HSP length: 54
effective length of query: 151
effective length of database: 97,532
effective search space: 14727332
effective search space used: 14727332
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)
S2: 41 (20.6 bits)