Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000449-TA|BGIBMGA000449-PA|undefined
(205 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1421 - 26451012-26451155,26451256-26451322,26451605-264516... 32 0.29
04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 30 1.2
10_07_0182 - 13887932-13888402 30 1.5
12_01_0467 + 3657320-3657992,3658077-3658342 29 2.0
11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328... 29 3.5
06_01_0060 + 522208-522756,522901-522912 28 4.6
10_02_0070 - 4919843-4919913,4921086-4921455 28 6.1
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 28 6.1
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 27 8.1
>07_03_1421 -
26451012-26451155,26451256-26451322,26451605-26451657,
26451736-26451806,26453340-26453482,26453858-26453919,
26454008-26454100,26454203-26454314,26454432-26454547,
26454625-26454787,26454829-26455349,26455429-26455528,
26457472-26457552,26457666-26457877
Length = 645
Score = 32.3 bits (70), Expect = 0.29
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 128 REGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYN-YQGKGYSGAQQQNKPRPNKTRTSAEA 186
RE A P A S PSG ++A GGD ++ G G + + R + EA
Sbjct: 3 REAAAPGRTAGKASAPSGHHHAGARGGGGDLWSEIMASGGGGGAARIGVVYGRRRAAQEA 62
Query: 187 SVHRRGIVD 195
S RG VD
Sbjct: 63 S-RPRGAVD 70
>04_03_0850 -
20269047-20270595,20270708-20270751,20271248-20271329,
20274027-20274115
Length = 587
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 113 CGDVKPMMGAPPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNYQGKG 165
CG V + G+ PS+ + C+Q + G+Y+ + + Y ++ G G
Sbjct: 401 CG-VGEIHGSKPSELSRSKEKGECSQSSKSSMGDYSTSTSISDDSYGSFSGNG 452
>10_07_0182 - 13887932-13888402
Length = 156
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 154 AGGDYYNYQGKGYSGAQQQNKPRPNKTRTSAEASVHRRGIVDH 196
AG + +++G+G G + KTR A A++H R V+H
Sbjct: 74 AGWEDLSFEGRGRGGGGLGSGDGLGKTRAPAAAAIHARRSVEH 116
>12_01_0467 + 3657320-3657992,3658077-3658342
Length = 312
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 120 MGAPPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNY 161
+GAPPS A+PD D P + +Y+ GG + Y
Sbjct: 256 LGAPPSPPGYEAEPDGPEDDIEDPFVDLPPEYDFFGGFGHGY 297
>11_01_0428 +
3279662-3279784,3281676-3281756,3281845-3281933,
3282011-3282085,3282211-3282269,3282316-3282414,
3282762-3283013,3283050-3283180
Length = 302
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 137 AQDTSQPSGEYNAQYNAAGGDYYNYQGKG 165
A P+ +Y ++ G DYYNY+G+G
Sbjct: 176 AMSNGPPAYDYGEEWEEEG-DYYNYRGRG 203
>06_01_0060 + 522208-522756,522901-522912
Length = 186
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 105 QQQQELPLCGDVKPMMGAPPSKQREGAQPDSCAQDTSQPSG-EYNAQYNAAGGDYYNYQG 163
QQQ L L + G+PPS Q + Q G +Y A ++ +
Sbjct: 68 QQQVSLSLYNNAAGAAGSPPSSLVAHQQLAAAQPLMFQLRGSKYLGPVKALLAEFCSLDV 127
Query: 164 KGYSGAQQQNKPRPN 178
+ GA+QQ P PN
Sbjct: 128 EAMDGAKQQRPPNPN 142
>10_02_0070 - 4919843-4919913,4921086-4921455
Length = 146
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 4 GRTLSGSSGQVCRPHFHTPLHPWLESKALGS 34
G+T S S+ + C TPL PWL + S
Sbjct: 73 GQTRSRSASRTCCSRRRTPLCPWLPCSCIAS 103
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 115 DVKPMMGAPPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNYQ--GKGYSGAQ-Q 171
+V+ APP A P + +S + AQ NAA D+ + K S +Q
Sbjct: 4 EVRSSSAAPPDPPPRSASPPATPVASSAGASSPPAQTNAASIDWLGGEPISKVESSSQIA 63
Query: 172 QNKPRPNKTRTSAEASV 188
+ PRP+ + +A A+V
Sbjct: 64 PHAPRPSLSTNAAGAAV 80
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 131 AQPDSCAQDTSQPSGEYNAQYNAAGG-DY-YNYQGKGYS 167
A P + G+ N Q N +GG +Y Y+Y +GYS
Sbjct: 37 ANPQPTKKGAKDVKGKNNGQENGSGGRNYDYDYYNRGYS 75
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.127 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,623,389
Number of Sequences: 37544
Number of extensions: 212109
Number of successful extensions: 415
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 12
length of query: 205
length of database: 14,793,348
effective HSP length: 79
effective length of query: 126
effective length of database: 11,827,372
effective search space: 1490248872
effective search space used: 1490248872
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)
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