Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000449-TA|BGIBMGA000449-PA|undefined
         (205 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)                    35   0.041
SB_19947| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)                30   1.6  
SB_15668| Best HMM Match : Chorion_3 (HMM E-Value=2.5)                 29   2.1  
SB_45391| Best HMM Match : DUF1509 (HMM E-Value=1.9)                   29   2.7  
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)               28   6.3  
SB_28454| Best HMM Match : SDA1 (HMM E-Value=1.7)                      28   6.3  

>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
          Length = 563

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 13/17 (76%), Positives = 15/17 (88%), Gaps = 1/17 (5%)

Query: 14  VCRPHFHTPLHPWLESK 30
           VCRPHFHTP+  W+ESK
Sbjct: 251 VCRPHFHTPIQ-WIESK 266


>SB_19947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 139 DTSQPSGEYNAQYNAAGGDYYNYQGKGYSGAQQQNKPRPNKTRTSAEASVHRRGIVD 195
           D + P G +   +   G  YY Y G  Y G  QQN  RP+K   + E ++HR  + D
Sbjct: 2   DPTNPHGSHG-DHMVPG--YYGYHGFPYYGPVQQNIERPDK--GAWEYAMHREAMDD 53


>SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)
          Length = 713

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 104 MQQQQELPLCGDVKPMMGAPPSKQREGAQPDSCAQDTSQPSGEY---NAQYNAAGGD--Y 158
           M Q Q++         MG P S+Q++   P+S  QD   P  +Y     Q  A  GD  Y
Sbjct: 271 MSQPQDMGYPESQPQHMGYPESRQQDMGYPESQPQDMGYPESQYEQHQQQPFAVQGDQSY 330

Query: 159 YNYQGKGYSGAQQQNKPRPNKT 180
           +     G+  A +  +    +T
Sbjct: 331 WQPPQPGFRNADRAAEEEEGET 352


>SB_15668| Best HMM Match : Chorion_3 (HMM E-Value=2.5)
          Length = 276

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 104 MQQQQELPLCGDVKPMMGAPPSKQREGAQPDSCAQDTSQPSGEY 147
           M Q Q++         MG P S+Q++   P+S  QD   P  +Y
Sbjct: 205 MSQPQDMGYPESQPQHMGYPESRQQDMGYPESQPQDMGYPESQY 248


>SB_45391| Best HMM Match : DUF1509 (HMM E-Value=1.9)
          Length = 402

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 114 GDVKPMMGAPPSKQREGAQPDSCAQDTSQPSG-EYN 148
           G   P    PP  + EGA PD    D + P+  EYN
Sbjct: 262 GRKHPDADDPPDDEEEGAAPDGSEDDAANPADEEYN 297


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 111  PLCGDVKPMMGAPPSKQREGAQPDSCAQDTSQPSGEYNAQYNAAGGDYYNYQGKGYSGAQ 170
            PL G       + P    +  QP S    + QPS + + QYN  G  Y   Q    S   
Sbjct: 1771 PLAGQPPQQSHSEPGSTSQQTQPQSMQGPSQQPSVQQSQQYN--GQQYPQAQSYAPSATS 1828

Query: 171  Q 171
            Q
Sbjct: 1829 Q 1829


>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 784

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 134 DSCAQDTSQPSGEYNAQYNAAGGDYYNYQGKGYSGAQQQNKP-RPNKTRTSAEASVHRR 191
           D    D      +Y+  Y   G DY N  G G      + +P  P++  TS      RR
Sbjct: 561 DDYGDDYGNGGDDYDDDYGDGGDDYGNDYGNGGDDNGDEKEPEEPSEPETSGSTRRRRR 619


>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
          Length = 398

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 103 FMQQQQELPLCGDVKPMMGAPPSKQREGAQPDS 135
           FM Q Q+LP  G   P   AP +  ++  QPDS
Sbjct: 316 FMVQLQKLPSEGSFPPNRVAPSATMQQRNQPDS 348


>SB_28454| Best HMM Match : SDA1 (HMM E-Value=1.7)
          Length = 383

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 160 NYQGKGYSGAQQQNKPRPNKTRTSAEASVHRRGIVDHLPKDSS 202
           N +GK    A +  KP P   + +     HR G++   P  SS
Sbjct: 253 NKRGKSPRQANRNVKPMPGHAQATRGIEAHRAGVIGEHPLTSS 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.127    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,912,905
Number of Sequences: 59808
Number of extensions: 202043
Number of successful extensions: 423
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 14
length of query: 205
length of database: 16,821,457
effective HSP length: 79
effective length of query: 126
effective length of database: 12,096,625
effective search space: 1524174750
effective search space used: 1524174750
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)